Variant report

Variant	rs586902
Chromosome Location	chr1:57424735-57424736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11537744	1.00[ASN][1000 genomes]
rs17301153	1.00[ASN][1000 genomes]
rs17418461	1.00[ASN][1000 genomes]
rs17451091	1.00[ASN][1000 genomes]
rs17451521	1.00[ASN][1000 genomes]
rs56143927	1.00[ASN][1000 genomes]
rs585061	1.00[ASN][1000 genomes]
rs605632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs619545	1.00[ASN][1000 genomes]
rs620709	1.00[ASN][1000 genomes]
rs656598	1.00[ASN][1000 genomes]
rs6699859	1.00[ASN][1000 genomes]
rs706470	1.00[ASN][1000 genomes]
rs737189	1.00[ASN][1000 genomes]
rs885391	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57417800-57427000	Genic enhancers	Liver	Liver
2	chr1:57422400-57425800	Enhancers	Fetal Intestine Large	intestine
3	chr1:57422600-57425800	Enhancers	HepG2	liver
4	chr1:57423400-57424800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:57423400-57425000	Enhancers	NHDF-Ad	bronchial
6	chr1:57423400-57425400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:57423400-57425400	Enhancers	Fetal Intestine Small	intestine
8	chr1:57423600-57424800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:57423600-57424800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:57423600-57424800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links