Variant report

Variant	rs737189
Chromosome Location	chr1:57309137-57309138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11537744	1.00[ASN][1000 genomes]
rs17301153	1.00[ASN][1000 genomes]
rs17451091	1.00[ASN][1000 genomes]
rs56143927	1.00[ASN][1000 genomes]
rs585061	1.00[ASN][1000 genomes]
rs586902	1.00[ASN][1000 genomes]
rs605632	1.00[ASN][1000 genomes]
rs619545	1.00[ASN][1000 genomes]
rs620709	1.00[ASN][1000 genomes]
rs656598	1.00[ASN][1000 genomes]
rs6699859	1.00[ASN][1000 genomes]
rs706470	1.00[ASN][1000 genomes]
rs885391	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1000266	chr1:57291371-57319480	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57303400-57310800	Weak transcription	HepG2	liver
2	chr1:57309000-57309600	Weak transcription	Brain Germinal Matrix	brain
3	chr1:57309000-57310200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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