Variant report

Variant	rs6699859
Chromosome Location	chr1:57360450-57360451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11537744	1.00[ASN][1000 genomes]
rs17301153	1.00[ASN][1000 genomes]
rs17418461	1.00[ASN][1000 genomes]
rs17451091	1.00[ASN][1000 genomes]
rs17451521	1.00[ASN][1000 genomes]
rs56143927	1.00[ASN][1000 genomes]
rs585061	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs586902	1.00[ASN][1000 genomes]
rs605632	1.00[ASN][1000 genomes]
rs608567	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs619545	0.82[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs620709	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs656598	1.00[ASN][1000 genomes]
rs706470	0.94[GIH][hapmap];0.90[MEX][hapmap];1.00[ASN][1000 genomes]
rs706476	0.86[MEX][hapmap]
rs706477	1.00[YRI][hapmap]
rs706479	1.00[YRI][hapmap]
rs737189	1.00[ASN][1000 genomes]
rs885391	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6699859	BSND	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57359600-57362400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:57360400-57362000	Weak transcription	Fetal Intestine Large	intestine
3	chr1:57360400-57362200	Weak transcription	HepG2	liver
4	chr1:57360400-57364400	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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