Variant report

Variant	rs656598
Chromosome Location	chr1:57410145-57410146
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11537744	1.00[ASN][1000 genomes]
rs17301153	1.00[ASN][1000 genomes]
rs17418461	1.00[ASN][1000 genomes]
rs17451091	1.00[ASN][1000 genomes]
rs17451521	1.00[ASN][1000 genomes]
rs56143927	1.00[ASN][1000 genomes]
rs585061	1.00[ASN][1000 genomes]
rs586902	1.00[ASN][1000 genomes]
rs605632	1.00[ASN][1000 genomes]
rs619545	1.00[ASN][1000 genomes]
rs620709	1.00[ASN][1000 genomes]
rs635833	0.87[CEU][hapmap]
rs652553	0.87[CEU][hapmap]
rs6699859	1.00[ASN][1000 genomes]
rs676480	0.88[CEU][hapmap]
rs706470	1.00[ASN][1000 genomes]
rs737189	1.00[ASN][1000 genomes]
rs885391	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57405200-57418200	Weak transcription	Pancreas	Pancrea
2	chr1:57405400-57414000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:57410000-57410200	Enhancers	Adipose Nuclei	Adipose
4	chr1:57410000-57410600	Genic enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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