Variant report

Variant	rs58736630
Chromosome Location	chr12:30654009-30654010
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16906447	0.88[EUR][1000 genomes]
rs57283759	1.00[AMR][1000 genomes]
rs57348846	1.00[AMR][1000 genomes]
rs58594026	1.00[AMR][1000 genomes]
rs59475424	1.00[AMR][1000 genomes]
rs61501812	1.00[AMR][1000 genomes]
rs7302897	0.88[EUR][1000 genomes]
rs73081855	0.94[EUR][1000 genomes]
rs73081858	0.94[EUR][1000 genomes]
rs73081860	0.94[EUR][1000 genomes]
rs73081871	0.89[EUR][1000 genomes]
rs73081875	0.89[EUR][1000 genomes]
rs73081877	0.89[EUR][1000 genomes]
rs73081879	0.89[EUR][1000 genomes]
rs73081883	0.89[EUR][1000 genomes]
rs73081886	0.89[EUR][1000 genomes]
rs73081888	0.89[EUR][1000 genomes]
rs73081889	0.89[EUR][1000 genomes]
rs73081890	0.89[EUR][1000 genomes]
rs73081893	0.89[EUR][1000 genomes]
rs73081894	0.89[EUR][1000 genomes]
rs73081897	0.89[EUR][1000 genomes]
rs73081901	0.89[EUR][1000 genomes]
rs73083703	0.89[EUR][1000 genomes]
rs73083706	0.89[EUR][1000 genomes]
rs73083708	0.89[EUR][1000 genomes]
rs73083710	0.89[EUR][1000 genomes]
rs73083712	0.89[EUR][1000 genomes]
rs73083714	0.89[EUR][1000 genomes]
rs73083721	0.89[EUR][1000 genomes]
rs73083722	0.89[EUR][1000 genomes]
rs73083728	0.89[EUR][1000 genomes]
rs73083729	0.89[EUR][1000 genomes]
rs73083733	0.89[EUR][1000 genomes]
rs73083734	0.89[EUR][1000 genomes]
rs73083735	0.89[EUR][1000 genomes]
rs73083737	0.89[EUR][1000 genomes]
rs73083742	0.89[EUR][1000 genomes]
rs73083744	0.89[EUR][1000 genomes]
rs74084318	0.88[EUR][1000 genomes]
rs924991	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1050233	chr12:30590071-30670919	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30653600-30657600	Weak transcription	Liver	Liver
2	chr12:30653800-30655000	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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