Variant report

Variant	rs73081871
Chromosome Location	chr12:30671797-30671798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10161082	0.89[EUR][1000 genomes]
rs58736630	0.89[EUR][1000 genomes]
rs58828862	0.86[EUR][1000 genomes]
rs73081831	1.00[AMR][1000 genomes]
rs73081846	1.00[AMR][1000 genomes]
rs73081852	1.00[AMR][1000 genomes]
rs73081855	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081858	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081860	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081870	0.89[EUR][1000 genomes]
rs73081875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081889	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081890	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081893	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081894	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081899	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73081901	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083703	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083706	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083708	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083710	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083712	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083714	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083721	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083722	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083724	0.86[EUR][1000 genomes]
rs73083728	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083729	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083730	0.86[EUR][1000 genomes]
rs73083733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083737	1.00[EUR][1000 genomes]
rs73083742	1.00[EUR][1000 genomes]
rs73083744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083762	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30667400-30671800	Weak transcription	Fetal Stomach	stomach
2	chr12:30669600-30673000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr12:30670800-30671800	Weak transcription	Fetal Heart	heart
4	chr12:30671400-30671800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:30671400-30672800	Enhancers	Fetal Kidney	kidney
6	chr12:30671400-30673000	Enhancers	HepG2	liver
7	chr12:30671600-30672200	Flanking Active TSS	Ovary	ovary
8	chr12:30671600-30672800	Enhancers	Stomach Mucosa	stomach

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