Variant report

Variant	rs73081858
Chromosome Location	chr12:30657092-30657093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10161082	0.84[EUR][1000 genomes]
rs16906447	0.83[EUR][1000 genomes]
rs58736630	0.94[EUR][1000 genomes]
rs58828862	0.81[EUR][1000 genomes]
rs7302897	0.83[EUR][1000 genomes]
rs73081831	1.00[AMR][1000 genomes]
rs73081846	1.00[AMR][1000 genomes]
rs73081852	1.00[AMR][1000 genomes]
rs73081855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081870	0.83[EUR][1000 genomes]
rs73081871	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081875	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081877	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081879	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081883	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081886	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081888	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081889	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081890	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081893	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081894	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081897	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73081899	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73081901	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083703	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083706	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083708	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083710	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083712	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083714	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083721	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083722	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083724	0.81[EUR][1000 genomes]
rs73083728	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083729	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083730	0.81[EUR][1000 genomes]
rs73083733	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083734	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083735	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083737	0.95[EUR][1000 genomes]
rs73083742	0.95[EUR][1000 genomes]
rs73083744	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083762	0.84[EUR][1000 genomes]
rs74084318	0.83[EUR][1000 genomes]
rs924991	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1050233	chr12:30590071-30670919	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30653600-30657600	Weak transcription	Liver	Liver
2	chr12:30655400-30657800	Weak transcription	HepG2	liver

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