Variant report

Variant	rs73081870
Chromosome Location	chr12:30668319-30668320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs73081855	0.83[EUR][1000 genomes]
rs73081858	0.83[EUR][1000 genomes]
rs73081860	0.83[EUR][1000 genomes]
rs73081871	0.89[EUR][1000 genomes]
rs73081875	0.89[EUR][1000 genomes]
rs73081877	0.89[EUR][1000 genomes]
rs73081879	0.89[EUR][1000 genomes]
rs73081883	0.89[EUR][1000 genomes]
rs73081886	0.89[EUR][1000 genomes]
rs73081888	0.89[EUR][1000 genomes]
rs73081889	0.89[EUR][1000 genomes]
rs73081890	0.89[EUR][1000 genomes]
rs73081893	0.89[EUR][1000 genomes]
rs73081894	0.89[EUR][1000 genomes]
rs73081897	0.89[EUR][1000 genomes]
rs73081901	0.89[EUR][1000 genomes]
rs73083703	0.89[EUR][1000 genomes]
rs73083706	0.89[EUR][1000 genomes]
rs73083708	0.89[EUR][1000 genomes]
rs73083710	0.89[EUR][1000 genomes]
rs73083712	0.89[EUR][1000 genomes]
rs73083714	0.89[EUR][1000 genomes]
rs73083721	0.89[EUR][1000 genomes]
rs73083722	0.89[EUR][1000 genomes]
rs73083728	0.89[EUR][1000 genomes]
rs73083729	0.89[EUR][1000 genomes]
rs73083733	0.89[EUR][1000 genomes]
rs73083734	0.89[EUR][1000 genomes]
rs73083735	0.89[EUR][1000 genomes]
rs73083737	0.89[EUR][1000 genomes]
rs73083742	0.89[EUR][1000 genomes]
rs73083744	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1050233	chr12:30590071-30670919	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30662000-30668800	Weak transcription	Pancreas	Pancrea
2	chr12:30664400-30671400	Weak transcription	HepG2	liver
3	chr12:30666200-30668800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr12:30666600-30668600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr12:30667400-30668400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:30667400-30668400	Enhancers	NHEK	skin
7	chr12:30667400-30671800	Weak transcription	Fetal Stomach	stomach
8	chr12:30667600-30668400	Enhancers	Fetal Brain Male	brain
9	chr12:30668000-30668800	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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