Variant report

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10161082	0.89[EUR][1000 genomes]
rs58736630	0.89[EUR][1000 genomes]
rs58828862	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73081855	0.95[EUR][1000 genomes]
rs73081858	0.95[EUR][1000 genomes]
rs73081860	0.95[EUR][1000 genomes]
rs73081870	0.89[EUR][1000 genomes]
rs73081871	1.00[EUR][1000 genomes]
rs73081875	1.00[EUR][1000 genomes]
rs73081877	1.00[EUR][1000 genomes]
rs73081879	1.00[EUR][1000 genomes]
rs73081883	1.00[EUR][1000 genomes]
rs73081886	1.00[EUR][1000 genomes]
rs73081888	1.00[EUR][1000 genomes]
rs73081889	1.00[EUR][1000 genomes]
rs73081890	1.00[EUR][1000 genomes]
rs73081893	1.00[EUR][1000 genomes]
rs73081894	1.00[EUR][1000 genomes]
rs73081897	1.00[EUR][1000 genomes]
rs73081899	0.89[EUR][1000 genomes]
rs73081901	1.00[EUR][1000 genomes]
rs73083703	1.00[EUR][1000 genomes]
rs73083706	1.00[EUR][1000 genomes]
rs73083708	1.00[EUR][1000 genomes]
rs73083710	1.00[EUR][1000 genomes]
rs73083712	1.00[EUR][1000 genomes]
rs73083714	1.00[EUR][1000 genomes]
rs73083721	1.00[EUR][1000 genomes]
rs73083722	1.00[EUR][1000 genomes]
rs73083724	0.86[EUR][1000 genomes]
rs73083728	1.00[EUR][1000 genomes]
rs73083729	1.00[EUR][1000 genomes]
rs73083730	0.86[EUR][1000 genomes]
rs73083733	1.00[EUR][1000 genomes]
rs73083734	1.00[EUR][1000 genomes]
rs73083735	1.00[EUR][1000 genomes]
rs73083737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083744	1.00[EUR][1000 genomes]
rs73083762	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv469192	chr12:30678625-30707035	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv558029	chr12:30678625-30707035	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv976029	chr12:30687283-30702050	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30686000-30689400	Weak transcription	Pancreas	Pancrea
2	chr12:30686800-30689400	Weak transcription	Fetal Stomach	stomach
3	chr12:30686800-30690200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr12:30688400-30689600	Enhancers	Fetal Heart	heart
5	chr12:30688600-30689200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:30688600-30689800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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