Variant report

Variant	rs73083762
Chromosome Location	chr12:30699598-30699599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10161082	1.00[EUR][1000 genomes]
rs73081855	0.84[EUR][1000 genomes]
rs73081858	0.84[EUR][1000 genomes]
rs73081860	0.84[EUR][1000 genomes]
rs73081871	0.89[EUR][1000 genomes]
rs73081875	0.89[EUR][1000 genomes]
rs73081877	0.89[EUR][1000 genomes]
rs73081879	0.89[EUR][1000 genomes]
rs73081883	0.89[EUR][1000 genomes]
rs73081886	0.89[EUR][1000 genomes]
rs73081888	0.89[EUR][1000 genomes]
rs73081889	0.89[EUR][1000 genomes]
rs73081890	0.89[EUR][1000 genomes]
rs73081893	0.89[EUR][1000 genomes]
rs73081894	0.89[EUR][1000 genomes]
rs73081897	0.89[EUR][1000 genomes]
rs73081901	0.89[EUR][1000 genomes]
rs73083703	0.89[EUR][1000 genomes]
rs73083706	0.89[EUR][1000 genomes]
rs73083708	0.89[EUR][1000 genomes]
rs73083710	0.89[EUR][1000 genomes]
rs73083712	0.89[EUR][1000 genomes]
rs73083714	0.89[EUR][1000 genomes]
rs73083721	0.89[EUR][1000 genomes]
rs73083722	0.89[EUR][1000 genomes]
rs73083728	0.89[EUR][1000 genomes]
rs73083729	0.89[EUR][1000 genomes]
rs73083733	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73083734	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73083735	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73083737	0.89[EUR][1000 genomes]
rs73083742	0.89[EUR][1000 genomes]
rs73083744	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv469192	chr12:30678625-30707035	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv558029	chr12:30678625-30707035	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv976029	chr12:30687283-30702050	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30698400-30699600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:30698600-30699600	Enhancers	HMEC	breast
3	chr12:30698800-30699600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:30699200-30699600	Enhancers	Hela-S3	cervix
5	chr12:30699200-30700800	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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