Variant report

Variant	rs58828862
Chromosome Location	chr12:30689572-30689573
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10843773	0.95[ASN][1000 genomes]
rs2086899	0.87[ASN][1000 genomes]
rs4931347	0.81[ASN][1000 genomes]
rs57865433	1.00[ASN][1000 genomes]
rs60094407	1.00[ASN][1000 genomes]
rs61921137	1.00[ASN][1000 genomes]
rs73081855	0.81[EUR][1000 genomes]
rs73081858	0.81[EUR][1000 genomes]
rs73081860	0.81[EUR][1000 genomes]
rs73081871	0.86[EUR][1000 genomes]
rs73081875	0.86[EUR][1000 genomes]
rs73081877	0.86[EUR][1000 genomes]
rs73081879	0.86[EUR][1000 genomes]
rs73081883	0.86[EUR][1000 genomes]
rs73081886	0.86[EUR][1000 genomes]
rs73081888	0.86[EUR][1000 genomes]
rs73081889	0.86[EUR][1000 genomes]
rs73081890	0.86[EUR][1000 genomes]
rs73081893	0.86[EUR][1000 genomes]
rs73081894	0.86[EUR][1000 genomes]
rs73081897	0.86[EUR][1000 genomes]
rs73081901	0.86[EUR][1000 genomes]
rs73083703	0.86[EUR][1000 genomes]
rs73083706	0.86[EUR][1000 genomes]
rs73083708	0.86[EUR][1000 genomes]
rs73083710	0.86[EUR][1000 genomes]
rs73083712	0.86[EUR][1000 genomes]
rs73083714	0.86[EUR][1000 genomes]
rs73083721	0.86[EUR][1000 genomes]
rs73083722	0.86[EUR][1000 genomes]
rs73083724	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083728	0.86[EUR][1000 genomes]
rs73083729	0.86[EUR][1000 genomes]
rs73083730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083733	0.86[EUR][1000 genomes]
rs73083734	0.86[EUR][1000 genomes]
rs73083735	0.86[EUR][1000 genomes]
rs73083737	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73083742	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73083744	0.86[EUR][1000 genomes]
rs73287348	1.00[ASN][1000 genomes]
rs73287351	1.00[ASN][1000 genomes]
rs7968211	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv469192	chr12:30678625-30707035	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv558029	chr12:30678625-30707035	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv976029	chr12:30687283-30702050	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30686800-30690200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr12:30688400-30689600	Enhancers	Fetal Heart	heart
3	chr12:30688600-30689800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr12:30689400-30689600	Enhancers	Pancreas	Pancrea
5	chr12:30689400-30689800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr12:30689400-30689800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:30689400-30689800	Enhancers	Fetal Stomach	stomach

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