Variant report

Variant	rs58768743
Chromosome Location	chr6:15668630-15668631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11970057	1.00[AMR][1000 genomes]
rs57459363	1.00[AMR][1000 genomes]
rs59816508	1.00[AMR][1000 genomes]
rs61140002	1.00[AMR][1000 genomes]
rs6920076	1.00[AMR][1000 genomes]
rs73369534	1.00[AMR][1000 genomes]
rs73369547	1.00[AMR][1000 genomes]
rs73369586	1.00[AMR][1000 genomes]
rs73371597	1.00[AMR][1000 genomes]
rs73373627	1.00[AMR][1000 genomes]
rs73373670	1.00[AMR][1000 genomes]
rs73373688	1.00[AMR][1000 genomes]
rs73373689	1.00[AMR][1000 genomes]
rs73373692	1.00[AMR][1000 genomes]
rs73375404	1.00[AMR][1000 genomes]
rs73375425	1.00[AMR][1000 genomes]
rs73375433	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15668600-15669400	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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