Variant report

Variant	rs73373689
Chromosome Location	chr6:15683246-15683247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11970057	1.00[AMR][1000 genomes]
rs57459363	1.00[AMR][1000 genomes]
rs58768743	1.00[AMR][1000 genomes]
rs59816508	1.00[AMR][1000 genomes]
rs61140002	1.00[AMR][1000 genomes]
rs6920076	1.00[AMR][1000 genomes]
rs73369534	1.00[AMR][1000 genomes]
rs73369547	1.00[AMR][1000 genomes]
rs73369586	1.00[AMR][1000 genomes]
rs73371597	1.00[AMR][1000 genomes]
rs73373627	1.00[AMR][1000 genomes]
rs73373670	1.00[AMR][1000 genomes]
rs73373688	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373692	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73375404	1.00[AMR][1000 genomes]
rs73375425	1.00[AMR][1000 genomes]
rs73375433	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2757157	chr6:15668867-15725478	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759408	chr6:15668867-15725478	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3692888	chr6:15675641-15694811	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15675800-15685000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:15675800-15685000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:15682000-15684400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:15682000-15685400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:15682800-15683800	Enhancers	K562	blood
6	chr6:15682800-15684000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr6:15682800-15684600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:15682800-15685400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:15682800-15686800	Enhancers	Fetal Intestine Small	intestine
10	chr6:15683000-15684200	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:15683000-15684600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:15683200-15683600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
13	chr6:15683200-15684200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:15683200-15684200	Enhancers	HepG2	liver
15	chr6:15683200-15684400	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr6:15683200-15684600	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:15683200-15685200	Enhancers	Stomach Mucosa	stomach
18	chr6:15683200-15687400	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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