Variant report

Variant	rs73369534
Chromosome Location	chr6:15523388-15523389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15522061..15524909-chr6:15526952..15529207,2	MCF-7	breast:
2	chr6:15475822..15477498-chr6:15521346..15524316,2	K562	blood:
3	chr19:3098797..3100403-chr6:15522052..15525012,2	MCF-7	breast:
4	chr6:15522144..15525319-chr6:15525407..15528669,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11970057	1.00[AMR][1000 genomes]
rs57459363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58768743	1.00[AMR][1000 genomes]
rs59816508	1.00[AMR][1000 genomes]
rs61140002	1.00[AMR][1000 genomes]
rs6920076	1.00[AMR][1000 genomes]
rs73367315	0.86[AFR][1000 genomes]
rs73369547	1.00[AMR][1000 genomes]
rs73369586	1.00[AMR][1000 genomes]
rs73371597	1.00[AMR][1000 genomes]
rs73373627	1.00[AMR][1000 genomes]
rs73373670	1.00[AMR][1000 genomes]
rs73373688	1.00[AMR][1000 genomes]
rs73373689	1.00[AMR][1000 genomes]
rs73373692	1.00[AMR][1000 genomes]
rs73375404	1.00[AMR][1000 genomes]
rs73375425	1.00[AMR][1000 genomes]
rs73375433	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv522265	chr6:15494177-15546213	ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15492200-15527000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:15492400-15527200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:15492800-15527000	Strong transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:15494800-15524000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:15494800-15527000	Strong transcription	Primary B cells from peripheral blood	blood
6	chr6:15495000-15527200	Strong transcription	Dnd41	blood
7	chr6:15495000-15529200	Strong transcription	Primary T cells from cord blood	blood
8	chr6:15495200-15525800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:15495400-15525000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:15496000-15525200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:15496000-15525600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:15496000-15526600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:15496000-15528400	Strong transcription	Primary B cells from cord blood	blood
14	chr6:15497400-15526600	Strong transcription	Fetal Intestine Large	intestine
15	chr6:15500600-15524600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:15506000-15523600	Strong transcription	NHEK	skin
17	chr6:15506000-15527000	Strong transcription	Fetal Intestine Small	intestine
18	chr6:15506600-15523800	Weak transcription	Fetal Brain Male	brain
19	chr6:15506600-15527400	Strong transcription	Duodenum Mucosa	Duodenum
20	chr6:15506800-15525000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr6:15507000-15533200	Weak transcription	HSMM	muscle
22	chr6:15507400-15524400	Strong transcription	Fetal Stomach	stomach
23	chr6:15507400-15524800	Strong transcription	Fetal Lung	lung
24	chr6:15507400-15529400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:15508800-15523600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:15509000-15524600	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:15509000-15525800	Weak transcription	Fetal Kidney	kidney
28	chr6:15509200-15524000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:15509200-15524200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:15509200-15524600	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:15509200-15525000	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr6:15509200-15527200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr6:15509400-15525000	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:15510000-15526800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:15510800-15527000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:15511000-15524600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:15511200-15525400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:15511600-15528200	Weak transcription	Right Atrium	heart
39	chr6:15512000-15524800	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr6:15512600-15525000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:15512600-15525600	Strong transcription	HepG2	liver
42	chr6:15512600-15531000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr6:15512600-15536400	Weak transcription	Psoas Muscle	Psoas
44	chr6:15514000-15524200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:15515200-15525600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:15515200-15527000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:15515600-15525200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:15515800-15533600	Strong transcription	Thymus	Thymus
49	chr6:15516200-15525800	Strong transcription	Fetal Thymus	thymus
50	chr6:15516600-15525000	Strong transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links