Variant report

Variant	rs73375404
Chromosome Location	chr6:15690357-15690358
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15689426..15691062-chr6:16188089..16190345,2	K562	blood:
2	chr6:15689774..15693088-chr6:16205829..16209132,3	K562	blood:
3	chr6:15681708..15684305-chr6:15689801..15691675,2	K562	blood:
4	chr6:15689083..15690999-chr6:16131882..16134165,2	K562	blood:
5	chr6:15690304..15694051-chr6:16129108..16131986,7	K562	blood:
6	chr6:15689750..15690620-chr6:16183530..16184123,2	MCF-7	breast:
7	chr6:15687288..15693257-chr6:16127517..16131016,8	K562	blood:
8	chr6:15688875..15695962-chr6:16127988..16134034,16	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11970057	1.00[AMR][1000 genomes]
rs57459363	1.00[AMR][1000 genomes]
rs58768743	1.00[AMR][1000 genomes]
rs59816508	1.00[AMR][1000 genomes]
rs61140002	1.00[AMR][1000 genomes]
rs6920076	1.00[AMR][1000 genomes]
rs73369534	1.00[AMR][1000 genomes]
rs73369547	1.00[AMR][1000 genomes]
rs73369586	1.00[AMR][1000 genomes]
rs73371597	1.00[AMR][1000 genomes]
rs73373627	1.00[AMR][1000 genomes]
rs73373670	1.00[AMR][1000 genomes]
rs73373688	1.00[AMR][1000 genomes]
rs73373689	1.00[AMR][1000 genomes]
rs73373692	1.00[AMR][1000 genomes]
rs73375425	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73375433	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2757157	chr6:15668867-15725478	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759408	chr6:15668867-15725478	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3692888	chr6:15675641-15694811	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv433377	chr6:15686225-15713759	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15683800-15690400	Weak transcription	K562	blood
2	chr6:15685200-15690600	Weak transcription	Stomach Mucosa	stomach
3	chr6:15685400-15690400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:15686800-15690400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:15686800-15690800	Weak transcription	Fetal Thymus	thymus
6	chr6:15689000-15690600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:15689000-15692200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:15689600-15691000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr6:15689600-15691200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:15690000-15690600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr6:15690000-15691600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:15690000-15691600	Enhancers	Fetal Intestine Large	intestine
13	chr6:15690000-15692000	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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