Variant report

Variant	rs58812633
Chromosome Location	chr10:119189302-119189303
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11819595	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1983914	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55873277	1.00[AMR][1000 genomes]
rs55998432	1.00[AMR][1000 genomes]
rs74162309	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74162310	1.00[AFR][1000 genomes]
rs74162311	1.00[AMR][1000 genomes]
rs74162312	1.00[AMR][1000 genomes]
rs74162319	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7565	chr10:119167461-119212529	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119186000-119202200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:119187000-119189600	Enhancers	Thymus	Thymus
3	chr10:119187000-119189800	Enhancers	Fetal Thymus	thymus
4	chr10:119188200-119189600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr10:119188200-119189600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:119188600-119190800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:119188800-119190600	Weak transcription	K562	blood
8	chr10:119188800-119190800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:119188800-119190800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:119188800-119191000	Weak transcription	Fetal Heart	heart
11	chr10:119189000-119189600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:119189200-119189400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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