Variant report

Variant	rs58896696
Chromosome Location	chr8:106198396-106198397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs58173423	1.00[AMR][1000 genomes]
rs58210375	1.00[AMR][1000 genomes]
rs58393527	1.00[AMR][1000 genomes]
rs73296821	1.00[AMR][1000 genomes]
rs73298795	1.00[AMR][1000 genomes]
rs73300704	1.00[AMR][1000 genomes]
rs73300714	1.00[AMR][1000 genomes]
rs73300726	1.00[AMR][1000 genomes]
rs73302572	1.00[AMR][1000 genomes]
rs73302591	1.00[AMR][1000 genomes]
rs73306397	1.00[AMR][1000 genomes]
rs73306398	1.00[AMR][1000 genomes]
rs73306401	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73308311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762763	chr8:105943295-106218634	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv891253	chr8:105994885-106251476	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891255	chr8:106125471-106220667	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv891256	chr8:106125471-106242745	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106197800-106199400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr8:106198000-106199400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr8:106198200-106198600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:106198200-106198800	ZNF genes & repeats	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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