Variant report

Variant	rs73306401
Chromosome Location	chr8:106155111-106155112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs58173423	1.00[AMR][1000 genomes]
rs58210375	1.00[AMR][1000 genomes]
rs58393527	1.00[AMR][1000 genomes]
rs58896696	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293045	1.00[AMR][1000 genomes]
rs73296821	1.00[AMR][1000 genomes]
rs73298795	1.00[AMR][1000 genomes]
rs73300704	1.00[AMR][1000 genomes]
rs73300714	1.00[AMR][1000 genomes]
rs73300726	1.00[AMR][1000 genomes]
rs73302572	1.00[AMR][1000 genomes]
rs73302591	1.00[AMR][1000 genomes]
rs73306397	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73306398	1.00[AMR][1000 genomes]
rs73308311	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762763	chr8:105943295-106218634	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv891253	chr8:105994885-106251476	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891254	chr8:106060970-106175867	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv891255	chr8:106125471-106220667	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv891256	chr8:106125471-106242745	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106151600-106155600	Weak transcription	Ovary	ovary
2	chr8:106154600-106155600	Enhancers	Fetal Brain Male	brain
3	chr8:106154600-106156400	Active TSS	Brain Anterior Caudate	brain
4	chr8:106154800-106155400	Enhancers	Fetal Brain Female	brain
5	chr8:106154800-106155600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:106154800-106156200	Active TSS	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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