Variant report
| Variant | rs73296821 |
|---|---|
| Chromosome Location | chr8:106060421-106060422 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:106059067..106061144-chr8:106430161..106432374,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000169946 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs58173423 | 1.00[AMR][1000 genomes] |
| rs58210375 | 1.00[AMR][1000 genomes] |
| rs58393527 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58896696 | 1.00[AMR][1000 genomes] |
| rs73293045 | 1.00[AMR][1000 genomes] |
| rs73298795 | 1.00[AMR][1000 genomes] |
| rs73300704 | 1.00[AMR][1000 genomes] |
| rs73300714 | 1.00[AMR][1000 genomes] |
| rs73300726 | 1.00[AMR][1000 genomes] |
| rs73302572 | 1.00[AMR][1000 genomes] |
| rs73302591 | 1.00[AMR][1000 genomes] |
| rs73306397 | 1.00[AMR][1000 genomes] |
| rs73306398 | 1.00[AMR][1000 genomes] |
| rs73306401 | 1.00[AMR][1000 genomes] |
| rs73308311 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762763 | chr8:105943295-106218634 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv891253 | chr8:105994885-106251476 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
