Variant report
| Variant | rs73300726 |
|---|---|
| Chromosome Location | chr8:106108530-106108531 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:106108103..106110619-chr8:106122748..106124588,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs58173423 | 1.00[AMR][1000 genomes] |
| rs58210375 | 1.00[AMR][1000 genomes] |
| rs58393527 | 1.00[AMR][1000 genomes] |
| rs58896696 | 1.00[AMR][1000 genomes] |
| rs73293045 | 1.00[AMR][1000 genomes] |
| rs73296821 | 1.00[AMR][1000 genomes] |
| rs73298795 | 1.00[AMR][1000 genomes] |
| rs73300704 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73300714 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73302572 | 1.00[AMR][1000 genomes] |
| rs73302591 | 1.00[AMR][1000 genomes] |
| rs73306397 | 1.00[AMR][1000 genomes] |
| rs73306398 | 1.00[AMR][1000 genomes] |
| rs73306401 | 1.00[AMR][1000 genomes] |
| rs73308311 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762763 | chr8:105943295-106218634 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv891253 | chr8:105994885-106251476 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv891254 | chr8:106060970-106175867 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv465755 | chr8:106107997-106121745 | Weak transcription Enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:106105400-106109800 | Weak transcription | K562 | blood |
