The 2.0 version of rSNPBase

Variant report

Variant rs58978223
Chromosome Location chr2:48639995-48639996
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:48628200-48640000 Weak transcription Brain Inferior Temporal Lobe brain
2 chr2:48634000-48641400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr2:48634400-48641800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr2:48634600-48640200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr2:48634600-48641400 Weak transcription Duodenum Mucosa Duodenum
6 chr2:48634600-48642200 Weak transcription Small Intestine intestine
7 chr2:48635000-48640000 Weak transcription Fetal Intestine Large intestine
8 chr2:48635200-48640000 Weak transcription Fetal Intestine Small intestine
9 chr2:48635600-48641400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr2:48636400-48640000 Enhancers Adipose Nuclei Adipose
11 chr2:48637200-48642200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr2:48637800-48640000 Weak transcription Primary hematopoietic stem cells short term culture blood
13 chr2:48637800-48642400 Weak transcription A549 lung
14 chr2:48638200-48640000 Weak transcription Stomach Smooth Muscle stomach
15 chr2:48638200-48642200 Weak transcription Left Ventricle heart
16 chr2:48638400-48640000 Weak transcription Ovary ovary
17 chr2:48638400-48640000 Weak transcription Spleen Spleen
18 chr2:48638400-48641800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr2:48638400-48641800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr2:48638400-48642400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr2:48638400-48643400 Weak transcription Gastric stomach
22 chr2:48639200-48640400 Enhancers Fetal Kidney kidney
23 chr2:48639200-48642200 Weak transcription Fetal Muscle Trunk muscle
24 chr2:48639400-48640000 Enhancers NHDF-Ad bronchial
25 chr2:48639400-48640400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr2:48639400-48640800 Enhancers Fetal Adrenal Gland Adrenal Gland
27 chr2:48639400-48640800 Enhancers Fetal Stomach stomach
28 chr2:48639400-48641800 Enhancers HepG2 liver
29 chr2:48639400-48642200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr2:48639600-48640000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr2:48639600-48640400 Enhancers Fetal Lung lung
32 chr2:48639600-48641000 Enhancers Brain Substantia Nigra brain
33 chr2:48639600-48642000 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr2:48639600-48645200 Enhancers Cortex derived primary cultured neurospheres brain
35 chr2:48639600-48647400 Enhancers Liver Liver
36 chr2:48639800-48640200 Weak transcription Colon Smooth Muscle Colon
37 chr2:48639800-48640600 Enhancers Primary monocytes fromperipheralblood blood
38 chr2:48639800-48640800 Enhancers Brain Hippocampus Middle brain

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Last update: Aug 31, 2015