The 2.0 version of rSNPBase

Variant report

Variant rs58012056
Chromosome Location chr2:48580645-48580646
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:48571200-48605200 Weak transcription Colonic Mucosa Colon
2 chr2:48572200-48597000 Weak transcription iPS-15b Cell Line embryonic stem cell
3 chr2:48573400-48583200 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr2:48573600-48604000 Weak transcription Ovary ovary
5 chr2:48574200-48581000 Genic enhancers HepG2 liver
6 chr2:48574200-48602000 Weak transcription Gastric stomach
7 chr2:48574600-48602000 Weak transcription Small Intestine intestine
8 chr2:48574800-48589600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr2:48574800-48589600 Weak transcription H9 Cell Line embryonic stem cell
10 chr2:48576200-48583800 Weak transcription iPS-18 Cell Line embryonic stem cell
11 chr2:48576200-48597000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr2:48576200-48602000 Weak transcription Lung lung
13 chr2:48576400-48583800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
14 chr2:48576400-48590000 Weak transcription Placenta Placenta
15 chr2:48576600-48581400 Enhancers Primary T helper naive cells fromperipheralblood blood
16 chr2:48576600-48595600 Weak transcription Fetal Brain Female brain
17 chr2:48576600-48602000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr2:48577000-48580800 Enhancers Brain Anterior Caudate brain
19 chr2:48577000-48581400 Enhancers Primary T killer naive cells fromperipheralblood blood
20 chr2:48577000-48583800 Enhancers Primary T helper cells fromperipheralblood blood
21 chr2:48577200-48581600 Enhancers Brain Hippocampus Middle brain
22 chr2:48577600-48581600 Enhancers Primary T helper 17 cells PMA-I stimulated --
23 chr2:48577600-48584200 Weak transcription Thymus Thymus
24 chr2:48577600-48589600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
25 chr2:48577600-48589600 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr2:48577800-48592400 Weak transcription Right Atrium heart
27 chr2:48577800-48602000 Weak transcription Fetal Kidney kidney
28 chr2:48577800-48603800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr2:48578200-48584400 Weak transcription Fetal Thymus thymus
30 chr2:48578600-48581400 Enhancers Primary T killer memory cells from peripheral blood blood
31 chr2:48578600-48581600 Enhancers Primary T regulatory cells fromperipheralblood blood
32 chr2:48578600-48581600 Enhancers Liver Liver
33 chr2:48578600-48584600 Enhancers Primary monocytes fromperipheralblood blood
34 chr2:48578600-48591000 Weak transcription Fetal Muscle Trunk muscle
35 chr2:48578600-48604800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
36 chr2:48578800-48580800 Enhancers Duodenum Smooth Muscle Duodenum
37 chr2:48578800-48581000 Enhancers Primary mononuclear cells fromperipheralblood Blood
38 chr2:48578800-48581200 Weak transcription Right Ventricle heart
39 chr2:48578800-48581600 Enhancers Adipose Nuclei Adipose
40 chr2:48578800-48581800 Enhancers Brain Angular Gyrus brain
41 chr2:48578800-48585000 Enhancers Primary neutrophils fromperipheralblood blood
42 chr2:48578800-48585000 Enhancers Primary B cells from peripheral blood blood
43 chr2:48578800-48589000 Weak transcription iPS-20b Cell Line embryonic stem cell
44 chr2:48578800-48589600 Weak transcription ES-I3 Cell Line embryonic stem cell
45 chr2:48579000-48580800 Enhancers Osteobl bone
46 chr2:48579000-48581000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
47 chr2:48579000-48581200 Weak transcription Primary T cells fromperipheralblood blood
48 chr2:48579000-48581200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
49 chr2:48579000-48581400 Enhancers Brain Cingulate Gyrus brain
50 chr2:48579000-48581400 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015