The 2.0 version of rSNPBase

Variant report

Variant rs57131168
Chromosome Location chr2:48545111-48545112
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:48540600-48547400 Active TSS GM12878-XiMat blood
2 chr2:48543200-48553200 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr2:48543400-48545600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr2:48543400-48546800 Weak transcription Placenta Placenta
5 chr2:48543400-48547800 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr2:48543400-48551800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr2:48543400-48552000 Weak transcription Stomach Mucosa stomach
8 chr2:48543400-48553000 Weak transcription Lung lung
9 chr2:48543400-48553000 Weak transcription Psoas Muscle Psoas
10 chr2:48543400-48568600 Weak transcription HSMM muscle
11 chr2:48543600-48545400 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr2:48543600-48545600 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr2:48543600-48545600 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr2:48543600-48546800 Enhancers Primary neutrophils fromperipheralblood blood
15 chr2:48543600-48547600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
16 chr2:48543600-48548000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr2:48543600-48548000 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr2:48543600-48548200 Enhancers Primary hematopoietic stem cells blood
19 chr2:48543600-48548200 Enhancers Primary T killer memory cells from peripheral blood blood
20 chr2:48543600-48548400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr2:48543600-48549200 Weak transcription ES-WA7 Cell Line embryonic stem cell
22 chr2:48543600-48550000 Enhancers Primary T helper cells fromperipheralblood blood
23 chr2:48543600-48550200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr2:48543600-48551000 Enhancers Primary T helper naive cells from peripheral blood blood
25 chr2:48543600-48552000 Weak transcription Duodenum Mucosa Duodenum
26 chr2:48543600-48552200 Weak transcription Osteobl bone
27 chr2:48543600-48553200 Weak transcription H9 Cell Line embryonic stem cell
28 chr2:48543600-48553400 Weak transcription Rectal Smooth Muscle rectum
29 chr2:48543600-48554400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
30 chr2:48543600-48555400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr2:48543600-48556600 Weak transcription H1 Cell Line embryonic stem cell
32 chr2:48543600-48559400 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr2:48543600-48561000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
34 chr2:48543600-48570600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr2:48543800-48545800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr2:48543800-48546800 Enhancers Brain Substantia Nigra brain
37 chr2:48543800-48550000 Weak transcription HUES6 Cell Line embryonic stem cell
38 chr2:48544000-48545400 Weak transcription HUES48 Cell Line embryonic stem cell
39 chr2:48544000-48545400 Weak transcription HUES64 Cell Line embryonic stem cell
40 chr2:48544000-48545400 Weak transcription Pancreatic Islets Pancreatic Islet
41 chr2:48544000-48545800 Enhancers Primary Natural Killer cells fromperipheralblood blood
42 chr2:48544000-48546400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
43 chr2:48544000-48546600 Enhancers Primary mononuclear cells fromperipheralblood Blood
44 chr2:48544000-48546800 Enhancers Primary monocytes fromperipheralblood blood
45 chr2:48544000-48549800 Enhancers Primary B cells from peripheral blood blood
46 chr2:48544000-48550000 Enhancers Primary T regulatory cells fromperipheralblood blood
47 chr2:48544200-48545200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr2:48544200-48545800 Enhancers Primary T cells fromperipheralblood blood
49 chr2:48544200-48545800 Weak transcription NHLF lung
50 chr2:48544200-48547000 Enhancers Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015