The 2.0 version of rSNPBase

Variant report

Variant rs6722246
Chromosome Location chr2:48597045-48597046
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:48571200-48605200 Weak transcription Colonic Mucosa Colon
2 chr2:48573600-48604000 Weak transcription Ovary ovary
3 chr2:48574200-48602000 Weak transcription Gastric stomach
4 chr2:48574600-48602000 Weak transcription Small Intestine intestine
5 chr2:48576200-48602000 Weak transcription Lung lung
6 chr2:48576600-48602000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
7 chr2:48577800-48602000 Weak transcription Fetal Kidney kidney
8 chr2:48577800-48603800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr2:48578600-48604800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr2:48580600-48601800 Weak transcription Hela-S3 cervix
11 chr2:48580800-48599800 Weak transcription NHEK skin
12 chr2:48580800-48602000 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr2:48580800-48602000 Weak transcription Osteobl bone
14 chr2:48580800-48604000 Weak transcription Aorta Aorta
15 chr2:48581400-48600800 Weak transcription Spleen Spleen
16 chr2:48581400-48601800 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr2:48581400-48602000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr2:48581400-48602000 Weak transcription Rectal Smooth Muscle rectum
19 chr2:48581400-48608000 Weak transcription Pancreatic Islets Pancreatic Islet
20 chr2:48581800-48602000 Weak transcription Pancreas Pancrea
21 chr2:48581800-48602000 Weak transcription Right Ventricle heart
22 chr2:48581800-48604800 Weak transcription Psoas Muscle Psoas
23 chr2:48582000-48600800 Weak transcription Brain Inferior Temporal Lobe brain
24 chr2:48584400-48602000 Weak transcription Brain Angular Gyrus brain
25 chr2:48584600-48601000 Weak transcription Fetal Lung lung
26 chr2:48584800-48604400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr2:48585000-48600600 Weak transcription HUVEC blood vessel
28 chr2:48585600-48598000 Strong transcription Primary hematopoietic stem cells short term culture blood
29 chr2:48586000-48602000 Weak transcription Brain Germinal Matrix brain
30 chr2:48587000-48598400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr2:48588000-48602000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr2:48588200-48597800 Strong transcription Primary T helper cells fromperipheralblood blood
33 chr2:48588800-48597400 Strong transcription Monocytes-CD14+_RO01746 blood
34 chr2:48589400-48607400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr2:48589600-48598600 Strong transcription Primary B cells from cord blood blood
36 chr2:48589800-48597800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr2:48589800-48602000 Weak transcription Brain Anterior Caudate brain
38 chr2:48590000-48597200 Weak transcription H9 Cell Line embryonic stem cell
39 chr2:48590000-48597400 Weak transcription ES-I3 Cell Line embryonic stem cell
40 chr2:48590000-48602000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr2:48590000-48602000 Weak transcription Primary T killer memory cells from peripheral blood blood
42 chr2:48590000-48607400 Weak transcription Brain Cingulate Gyrus brain
43 chr2:48590200-48600800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr2:48590200-48601800 Weak transcription Brain Substantia Nigra brain
45 chr2:48590200-48601800 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr2:48590200-48602000 Weak transcription Primary T killer naive cells fromperipheralblood blood
47 chr2:48590800-48601200 Weak transcription HMEC breast
48 chr2:48591000-48600000 Weak transcription Muscle Satellite Cultured Cells --
49 chr2:48591000-48601000 Weak transcription Brain Hippocampus Middle brain
50 chr2:48591200-48602000 Weak transcription Thymus Thymus

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Last update: Aug 31, 2015