Variant report

Variant rs72820418
Chromosome Location chr2:48576687-48576688
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:48569000-48580000 Weak transcription Rectal Smooth Muscle rectum
2 chr2:48570800-48577400 Weak transcription Placenta Amnion Placenta Amnion
3 chr2:48571000-48577000 Weak transcription Spleen Spleen
4 chr2:48571200-48605200 Weak transcription Colonic Mucosa Colon
5 chr2:48571600-48580000 Weak transcription Stomach Smooth Muscle stomach
6 chr2:48572200-48597000 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr2:48572400-48580000 Weak transcription Stomach Mucosa stomach
8 chr2:48573000-48578000 ZNF genes & repeats GM12878-XiMat blood
9 chr2:48573200-48577600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr2:48573200-48577800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
11 chr2:48573200-48578400 ZNF genes & repeats Primary B cells from cord blood blood
12 chr2:48573200-48578800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr2:48573200-48579400 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
14 chr2:48573400-48577000 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
15 chr2:48573400-48578000 ZNF genes & repeats Fetal Intestine Large intestine
16 chr2:48573400-48578000 Strong transcription Rectal Mucosa Donor 29 rectum
17 chr2:48573400-48578400 ZNF genes & repeats Primary hematopoietic stem cells blood
18 chr2:48573400-48578800 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
19 chr2:48573400-48579200 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
20 chr2:48573400-48579200 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr2:48573400-48583200 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr2:48573600-48578600 Weak transcription Pancreas Pancrea
23 chr2:48573600-48579000 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
24 chr2:48573600-48579200 ZNF genes & repeats A549 lung
25 chr2:48573600-48579400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr2:48573600-48579400 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
27 chr2:48573600-48604000 Weak transcription Ovary ovary
28 chr2:48573800-48577000 ZNF genes & repeats Fetal Lung lung
29 chr2:48573800-48577200 Weak transcription Right Atrium heart
30 chr2:48573800-48577600 Weak transcription Right Ventricle heart
31 chr2:48574000-48577600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
32 chr2:48574000-48578800 Weak transcription HUVEC blood vessel
33 chr2:48574200-48577800 Strong transcription Osteobl bone
34 chr2:48574200-48578000 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr2:48574200-48581000 Genic enhancers HepG2 liver
36 chr2:48574200-48602000 Weak transcription Gastric stomach
37 chr2:48574400-48577600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
38 chr2:48574400-48578200 Strong transcription HSMM muscle
39 chr2:48574400-48578600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr2:48574600-48576800 ZNF genes & repeats NHDF-Ad bronchial
41 chr2:48574600-48602000 Weak transcription Small Intestine intestine
42 chr2:48574800-48577000 Weak transcription Brain Inferior Temporal Lobe brain
43 chr2:48574800-48577200 Weak transcription Brain Cingulate Gyrus brain
44 chr2:48574800-48578000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
45 chr2:48574800-48578200 Strong transcription Fetal Thymus thymus
46 chr2:48574800-48589600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
47 chr2:48574800-48589600 Weak transcription H9 Cell Line embryonic stem cell
48 chr2:48575000-48577000 Strong transcription Primary neutrophils fromperipheralblood blood
49 chr2:48575200-48578200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr2:48575600-48577800 ZNF genes & repeats Fetal Kidney kidney

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