Variant report

Variant	rs62137018
Chromosome Location	chr2:48631628-48631629
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10169629	0.92[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10208627	0.80[ASN][1000 genomes]
rs10211336	0.83[ASN][1000 genomes]
rs10454133	0.89[ASN][1000 genomes]
rs10454134	0.89[ASN][1000 genomes]
rs11680719	0.85[ASN][1000 genomes]
rs11683099	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11683639	0.85[ASN][1000 genomes]
rs11683708	0.83[ASN][1000 genomes]
rs11685861	0.80[ASN][1000 genomes]
rs11689622	0.83[ASN][1000 genomes]
rs12105983	0.80[ASN][1000 genomes]
rs12328506	0.83[ASN][1000 genomes]
rs13398791	0.83[ASN][1000 genomes]
rs13399936	0.86[ASN][1000 genomes]
rs13400909	0.85[ASN][1000 genomes]
rs13401749	0.85[ASN][1000 genomes]
rs13401752	0.85[ASN][1000 genomes]
rs17855177	0.81[ASN][1000 genomes]
rs4274640	0.85[ASN][1000 genomes]
rs4316980	0.87[ASN][1000 genomes]
rs4344965	0.80[ASN][1000 genomes]
rs4438532	0.89[ASN][1000 genomes]
rs4494796	0.87[ASN][1000 genomes]
rs4547570	0.83[ASN][1000 genomes]
rs4606978	0.90[ASN][1000 genomes]
rs55640438	0.89[ASN][1000 genomes]
rs55744465	0.86[ASN][1000 genomes]
rs55971719	0.80[ASN][1000 genomes]
rs56156294	0.86[ASN][1000 genomes]
rs56391806	0.86[ASN][1000 genomes]
rs57893565	0.81[ASN][1000 genomes]
rs58012056	0.80[ASN][1000 genomes]
rs58020097	0.85[ASN][1000 genomes]
rs58969359	0.85[ASN][1000 genomes]
rs59045263	0.80[ASN][1000 genomes]
rs60825643	0.83[ASN][1000 genomes]
rs60988618	0.84[ASN][1000 genomes]
rs62137015	0.80[ASN][1000 genomes]
rs62137041	0.87[ASN][1000 genomes]
rs6705802	0.81[ASN][1000 genomes]
rs6718068	0.81[ASN][1000 genomes]
rs6722246	0.81[ASN][1000 genomes]
rs6732196	0.93[ASN][1000 genomes]
rs6735288	0.80[ASN][1000 genomes]
rs6747441	0.97[ASN][1000 genomes]
rs6756596	0.84[ASN][1000 genomes]
rs72820423	0.80[ASN][1000 genomes]
rs72820427	0.80[ASN][1000 genomes]
rs72820437	0.81[ASN][1000 genomes]
rs72820439	0.81[ASN][1000 genomes]
rs72820445	0.81[ASN][1000 genomes]
rs72820474	0.89[ASN][1000 genomes]
rs72820479	0.87[ASN][1000 genomes]
rs72820484	0.86[ASN][1000 genomes]
rs72820492	0.84[ASN][1000 genomes]
rs72820494	0.85[ASN][1000 genomes]
rs72820499	0.85[ASN][1000 genomes]
rs7562069	0.81[ASN][1000 genomes]
rs7565792	0.83[ASN][1000 genomes]
rs7573316	0.81[ASN][1000 genomes]
rs7576964	0.81[ASN][1000 genomes]
rs7579932	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530831	chr2:48059709-48632317	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2762252	chr2:48554150-48741093	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv581775	chr2:48619869-48714938	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv518718	chr2:48624007-48650308	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62137018	PPP1R21	cis	Thyroid	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48627400-48632200	Weak transcription	Fetal Intestine Large	intestine
2	chr2:48628200-48632200	Weak transcription	Fetal Intestine Small	intestine
3	chr2:48628200-48640000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:48628600-48633600	Weak transcription	Duodenum Mucosa	Duodenum

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