Variant report

Variant	rs58995758
Chromosome Location	chr11:73001618-73001619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72999826..73001894-chr11:73086497..73088526,2	K562	blood:
2	chr11:72996129..72998235-chr11:73000749..73003241,2	MCF-7	breast:
3	chr11:73000200..73002176-chr11:73003016..73005569,2	K562	blood:

Variant related genes	Relation type
ENSG00000171631	Chromatin interaction
ENSG00000054967	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12280876	1.00[EUR][1000 genomes]
rs12284174	1.00[EUR][1000 genomes]
rs12291164	1.00[EUR][1000 genomes]
rs28719552	1.00[EUR][1000 genomes]
rs3933402	1.00[EUR][1000 genomes]
rs55851019	1.00[EUR][1000 genomes]
rs58053874	1.00[EUR][1000 genomes]
rs58460917	1.00[EUR][1000 genomes]
rs59268601	1.00[EUR][1000 genomes]
rs59804106	1.00[EUR][1000 genomes]
rs60206663	1.00[EUR][1000 genomes]
rs60610185	1.00[EUR][1000 genomes]
rs60779105	1.00[EUR][1000 genomes]
rs60910538	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61086238	1.00[EUR][1000 genomes]
rs61122124	1.00[EUR][1000 genomes]
rs61400770	1.00[EUR][1000 genomes]
rs61654355	1.00[EUR][1000 genomes]
rs7111021	1.00[EUR][1000 genomes]
rs7119632	1.00[EUR][1000 genomes]
rs7119975	1.00[EUR][1000 genomes]
rs7122979	1.00[EUR][1000 genomes]
rs7123114	1.00[EUR][1000 genomes]
rs7123218	1.00[EUR][1000 genomes]
rs7127143	1.00[EUR][1000 genomes]
rs7127412	1.00[EUR][1000 genomes]
rs947836	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72997000-73003400	Enhancers	Fetal Intestine Large	intestine
2	chr11:72998400-73003600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:72998600-73002000	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:72999000-73004600	Enhancers	Spleen	Spleen
5	chr11:72999200-73002600	Enhancers	Placenta	Placenta
6	chr11:72999800-73005000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr11:73000600-73003000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:73000600-73003000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:73000600-73003400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:73000600-73003400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:73000600-73011200	Weak transcription	Aorta	Aorta
12	chr11:73000800-73001800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:73000800-73002400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:73000800-73003200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:73000800-73003400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:73000800-73006200	Weak transcription	Right Atrium	heart
17	chr11:73000800-73007400	Weak transcription	Right Ventricle	heart
18	chr11:73000800-73008200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:73000800-73018000	Weak transcription	Pancreas	Pancrea
20	chr11:73001000-73001800	Weak transcription	Fetal Intestine Small	intestine
21	chr11:73001000-73002000	Weak transcription	A549	lung
22	chr11:73001000-73002400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:73001000-73002800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:73001000-73003000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:73001000-73003000	Weak transcription	NH-A	brain
26	chr11:73001000-73003200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:73001000-73003400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:73001000-73003400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:73001000-73003400	Weak transcription	Osteobl	bone
30	chr11:73001000-73004000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:73001000-73005200	Weak transcription	NHDF-Ad	bronchial
32	chr11:73001000-73006200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:73001000-73006200	Weak transcription	Fetal Heart	heart
34	chr11:73001000-73006200	Weak transcription	Hela-S3	cervix
35	chr11:73001000-73006200	Weak transcription	HMEC	breast
36	chr11:73001000-73006200	Weak transcription	HSMM	muscle
37	chr11:73001000-73006400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:73001000-73006400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:73001000-73006400	Weak transcription	Colon Smooth Muscle	Colon
40	chr11:73001000-73006400	Weak transcription	Left Ventricle	heart
41	chr11:73001200-73002200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr11:73001200-73003600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:73001200-73006200	Weak transcription	HUVEC	blood vessel
44	chr11:73001200-73010800	Weak transcription	Adipose Nuclei	Adipose
45	chr11:73001600-73005000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links