Variant report

Variant	rs59804106
Chromosome Location	chr11:73089351-73089352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73052088..73053863-chr11:73088723..73090410,2	K562	blood:
2	chr11:73052756..73055685-chr11:73086112..73090323,4	MCF-7	breast:
3	chr11:73067211..73073171-chr11:73086403..73091347,7	K562	blood:
4	chr11:73042602..73045462-chr11:73088644..73091188,2	K562	blood:
5	chr11:73061797..73063819-chr11:73087868..73089768,2	MCF-7	breast:
6	chr11:72974580..72977095-chr11:73086644..73089589,3	K562	blood:
7	chr11:73068546..73070976-chr11:73088795..73090535,2	K562	blood:
8	chr11:73060033..73062421-chr11:73088511..73090562,2	MCF-7	breast:
9	chr11:73015582..73020883-chr11:73085250..73090220,9	MCF-7	breast:
10	chr11:73018564..73020076-chr11:73087520..73089366,2	K562	blood:
11	chr11:73072848..73076565-chr11:73085578..73089791,6	MCF-7	breast:
12	chr11:73017077..73020076-chr11:73086849..73089366,3	K562	blood:
13	chr11:73070623..73072623-chr11:73089095..73090847,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000266866	Chromatin interaction
ENSG00000257038	Chromatin interaction
ENSG00000110237	Chromatin interaction
ENSG00000171631	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12280876	1.00[EUR][1000 genomes]
rs12284174	1.00[EUR][1000 genomes]
rs12291164	1.00[EUR][1000 genomes]
rs28719552	1.00[EUR][1000 genomes]
rs3933402	1.00[EUR][1000 genomes]
rs55851019	1.00[EUR][1000 genomes]
rs56024886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57968718	1.00[EUR][1000 genomes]
rs58053874	1.00[EUR][1000 genomes]
rs58460917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58965711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58995758	1.00[EUR][1000 genomes]
rs59268601	1.00[EUR][1000 genomes]
rs59271755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60206663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60478160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60610185	1.00[EUR][1000 genomes]
rs60779105	1.00[EUR][1000 genomes]
rs61086238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61122124	1.00[EUR][1000 genomes]
rs61260942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61400770	1.00[EUR][1000 genomes]
rs61654355	1.00[EUR][1000 genomes]
rs7111021	1.00[EUR][1000 genomes]
rs7119632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119975	1.00[EUR][1000 genomes]
rs7122979	1.00[EUR][1000 genomes]
rs7123114	1.00[EUR][1000 genomes]
rs7123218	1.00[EUR][1000 genomes]
rs7127143	1.00[EUR][1000 genomes]
rs7127412	1.00[EUR][1000 genomes]
rs7940496	1.00[EUR][1000 genomes]
rs947836	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv825993	chr11:73029209-73091929	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv897911	chr11:73044351-73108276	Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73087800-73095200	Enhancers	Fetal Heart	heart
2	chr11:73088000-73089400	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr11:73088200-73089600	Flanking Active TSS	Dnd41	blood
4	chr11:73088400-73089600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
5	chr11:73088400-73090000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:73088400-73092400	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr11:73088400-73093400	Weak transcription	Gastric	stomach
8	chr11:73088400-73100200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr11:73088600-73089400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:73088600-73089400	Active TSS	Adipose Nuclei	Adipose
11	chr11:73088600-73089400	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr11:73088600-73089600	Weak transcription	HSMMtube	muscle
13	chr11:73088600-73089800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:73088600-73089800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr11:73088600-73089800	Weak transcription	Left Ventricle	heart
16	chr11:73088600-73090000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr11:73088600-73090000	Weak transcription	Esophagus	oesophagus
18	chr11:73088600-73090000	Weak transcription	Right Atrium	heart
19	chr11:73088600-73090200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:73088600-73090400	Weak transcription	Pancreas	Pancrea
21	chr11:73088600-73090600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:73088600-73090600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:73088600-73090800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:73088600-73092600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr11:73088600-73093400	Weak transcription	Small Intestine	intestine
26	chr11:73088600-73094000	Weak transcription	Fetal Lung	lung
27	chr11:73088600-73100800	Enhancers	Placenta	Placenta
28	chr11:73088800-73089400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:73088800-73089400	Enhancers	Thymus	Thymus
30	chr11:73088800-73089600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:73088800-73089600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:73088800-73089600	Enhancers	Osteobl	bone
33	chr11:73088800-73089800	Enhancers	Primary T cells fromperipheralblood	blood
34	chr11:73088800-73089800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr11:73088800-73089800	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr11:73088800-73089800	Enhancers	Stomach Smooth Muscle	stomach
37	chr11:73088800-73089800	Enhancers	Spleen	Spleen
38	chr11:73088800-73090000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:73088800-73090000	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
40	chr11:73088800-73090000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
41	chr11:73088800-73090000	Weak transcription	Brain Angular Gyrus	brain
42	chr11:73088800-73090000	Flanking Active TSS	Hela-S3	cervix
43	chr11:73088800-73090000	Enhancers	HepG2	liver
44	chr11:73088800-73090200	Enhancers	Primary T cells from cord blood	blood
45	chr11:73088800-73090200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:73088800-73090200	Enhancers	Brain Anterior Caudate	brain
47	chr11:73088800-73090200	Enhancers	Duodenum Mucosa	Duodenum
48	chr11:73088800-73090400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr11:73088800-73090800	Weak transcription	Brain Substantia Nigra	brain
50	chr11:73088800-73091200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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