Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73192780..73195868-chr11:73198299..73201993,3	MCF-7	breast:
2	chr11:73188697..73191006-chr11:73192840..73195131,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12280876	1.00[EUR][1000 genomes]
rs12284174	1.00[EUR][1000 genomes]
rs12291164	1.00[EUR][1000 genomes]
rs28719552	1.00[EUR][1000 genomes]
rs3933402	1.00[EUR][1000 genomes]
rs55851019	1.00[EUR][1000 genomes]
rs56024886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57968718	1.00[EUR][1000 genomes]
rs58053874	1.00[EUR][1000 genomes]
rs58460917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58965711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58995758	1.00[EUR][1000 genomes]
rs59271755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59804106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60206663	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60478160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61086238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61260942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61400770	1.00[EUR][1000 genomes]
rs7940496	1.00[EUR][1000 genomes]
rs947836	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv508641	chr11:73149281-73235528	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv520130	chr11:73183598-73223776	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:73141800-73231600	Weak transcription	Thymus	Thymus
3	chr11:73163800-73225600	Weak transcription	Fetal Stomach	stomach
4	chr11:73172800-73218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:73182000-73230000	Weak transcription	Dnd41	blood
6	chr11:73186200-73205200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:73188400-73200400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:73188800-73203200	Weak transcription	Primary B cells from cord blood	blood
9	chr11:73189600-73194800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:73189600-73197000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:73190200-73195800	Weak transcription	HSMM	muscle
12	chr11:73190200-73204400	Weak transcription	Psoas Muscle	Psoas
13	chr11:73192200-73201600	Weak transcription	NHDF-Ad	bronchial
14	chr11:73192400-73194600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:73192400-73197800	Weak transcription	Liver	Liver
16	chr11:73192400-73202200	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search: