Variant report

Variant	rs59054107
Chromosome Location	chr1:185806018-185806019
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11801425	1.00[AMR][1000 genomes]
rs1321667	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1407432	1.00[AMR][1000 genomes]
rs1951514	1.00[AMR][1000 genomes]
rs55661579	1.00[AMR][1000 genomes]
rs56151138	1.00[AMR][1000 genomes]
rs59244411	1.00[AMR][1000 genomes]
rs59691709	1.00[AMR][1000 genomes]
rs59987592	1.00[AMR][1000 genomes]
rs61580019	1.00[AMR][1000 genomes]
rs74133675	0.89[AFR][1000 genomes]
rs74133687	1.00[AMR][1000 genomes]
rs74133690	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133691	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134206	1.00[AMR][1000 genomes]
rs74134209	1.00[AMR][1000 genomes]
rs74134303	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134304	0.89[AFR][1000 genomes]
rs74134306	1.00[AMR][1000 genomes]
rs74134310	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134313	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134314	1.00[AMR][1000 genomes]
rs74134349	1.00[AMR][1000 genomes]
rs74134350	1.00[AMR][1000 genomes]
rs74134353	1.00[AMR][1000 genomes]
rs74134354	1.00[AMR][1000 genomes]
rs74134355	1.00[AMR][1000 genomes]
rs74134357	1.00[AMR][1000 genomes]
rs74134358	1.00[AMR][1000 genomes]
rs74134359	1.00[AMR][1000 genomes]
rs74134360	1.00[AMR][1000 genomes]
rs74134378	1.00[AMR][1000 genomes]
rs74134384	1.00[AMR][1000 genomes]
rs74134388	1.00[AMR][1000 genomes]
rs74134390	1.00[AMR][1000 genomes]
rs74135308	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185803200-185850000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:185803800-185812000	Weak transcription	Aorta	Aorta
3	chr1:185804400-185809600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:185804600-185806800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:185804600-185812000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:185805600-185818200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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