Variant report

Variant	rs74134355
Chromosome Location	chr1:185866097-185866098
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185864902..185867350-chr1:185868645..185870866,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11801425	1.00[AMR][1000 genomes]
rs1321667	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1407432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1951514	1.00[AMR][1000 genomes]
rs55661579	1.00[AMR][1000 genomes]
rs56151138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59054107	1.00[AMR][1000 genomes]
rs59244411	1.00[AMR][1000 genomes]
rs59691709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59987592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61580019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133675	0.89[AFR][1000 genomes]
rs74133687	1.00[AMR][1000 genomes]
rs74133690	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133691	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134206	1.00[AMR][1000 genomes]
rs74134209	1.00[AMR][1000 genomes]
rs74134303	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134304	0.89[AFR][1000 genomes]
rs74134306	1.00[AMR][1000 genomes]
rs74134310	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134313	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134360	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134378	1.00[AMR][1000 genomes]
rs74134384	1.00[AMR][1000 genomes]
rs74134388	1.00[AMR][1000 genomes]
rs74134390	1.00[AMR][1000 genomes]
rs74135308	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185863400-185868000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:185865000-185866200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:185865000-185866200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:185865000-185866200	Weak transcription	Hela-S3	cervix
5	chr1:185865800-185866600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:185866000-185866800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links