Variant report

Variant	rs74133691
Chromosome Location	chr1:185820316-185820317
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:185816758..185818830-chr1:185820154..185822881,2	MCF-7	breast:
2	chr1:185819007..185822364-chr1:185824027..185827507,3	K562	blood:
3	chr1:185801576..185804195-chr1:185819606..185821997,2	K562	blood:
4	chr1:185818279..185821165-chr1:185821421..185823779,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11801425	1.00[AMR][1000 genomes]
rs1321667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1407432	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1951514	1.00[AMR][1000 genomes]
rs55661579	1.00[AMR][1000 genomes]
rs56151138	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59054107	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59244411	1.00[AMR][1000 genomes]
rs59691709	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59987592	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61580019	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133675	1.00[AFR][1000 genomes]
rs74133687	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134206	1.00[AMR][1000 genomes]
rs74134209	1.00[AMR][1000 genomes]
rs74134303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134304	1.00[AFR][1000 genomes]
rs74134306	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134314	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134349	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134350	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134353	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134354	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134355	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134357	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134358	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134359	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134360	1.00[AMR][1000 genomes]
rs74134378	1.00[AMR][1000 genomes]
rs74134384	1.00[AMR][1000 genomes]
rs74134388	1.00[AMR][1000 genomes]
rs74134390	1.00[AMR][1000 genomes]
rs74135308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv946547	chr1:185818492-185821818	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185803200-185850000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:185813400-185821600	Weak transcription	Aorta	Aorta
3	chr1:185813400-185839000	Weak transcription	Fetal Lung	lung
4	chr1:185816800-185823000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:185817400-185820600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:185817400-185821200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:185817600-185820400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:185817600-185821000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:185817600-185821000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:185817600-185821000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:185818000-185820400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr1:185818000-185821400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:185819200-185824400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:185819400-185820600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:185819600-185823400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr1:185819800-185820400	Weak transcription	Esophagus	oesophagus
17	chr1:185819800-185821600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:185819800-185822000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr1:185819800-185822600	Weak transcription	NHLF	lung
20	chr1:185819800-185826600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr1:185819800-185826600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:185819800-185829600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:185820000-185822000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:185820000-185822400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:185820000-185822400	Weak transcription	Osteobl	bone
26	chr1:185820000-185822600	Weak transcription	HMEC	breast
27	chr1:185820000-185822600	Weak transcription	NH-A	brain
28	chr1:185820000-185823000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:185820200-185822200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:185820200-185822400	Weak transcription	NHDF-Ad	bronchial
31	chr1:185820200-185822600	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links