Variant report

Variant	rs74133675
Chromosome Location	chr1:185793032-185793033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1321667	1.00[AFR][1000 genomes]
rs1407432	0.89[AFR][1000 genomes]
rs56151138	0.89[AFR][1000 genomes]
rs56156323	1.00[AMR][1000 genomes]
rs57073916	1.00[AMR][1000 genomes]
rs59054107	0.89[AFR][1000 genomes]
rs59691709	0.89[AFR][1000 genomes]
rs59987592	0.89[AFR][1000 genomes]
rs60546696	1.00[AMR][1000 genomes]
rs61580019	0.89[AFR][1000 genomes]
rs74133271	1.00[AMR][1000 genomes]
rs74133272	1.00[AMR][1000 genomes]
rs74133273	1.00[AMR][1000 genomes]
rs74133293	1.00[AMR][1000 genomes]
rs74133297	1.00[AMR][1000 genomes]
rs74133298	1.00[AMR][1000 genomes]
rs74133299	1.00[AMR][1000 genomes]
rs74133676	1.00[AMR][1000 genomes]
rs74133687	0.89[AFR][1000 genomes]
rs74133690	1.00[AFR][1000 genomes]
rs74133691	1.00[AFR][1000 genomes]
rs74134303	1.00[AFR][1000 genomes]
rs74134304	1.00[AFR][1000 genomes]
rs74134306	0.89[AFR][1000 genomes]
rs74134310	1.00[AFR][1000 genomes]
rs74134313	1.00[AFR][1000 genomes]
rs74134314	0.89[AFR][1000 genomes]
rs74134349	0.89[AFR][1000 genomes]
rs74134350	0.89[AFR][1000 genomes]
rs74134353	0.89[AFR][1000 genomes]
rs74134354	0.89[AFR][1000 genomes]
rs74134355	0.89[AFR][1000 genomes]
rs74134357	0.89[AFR][1000 genomes]
rs74134358	0.89[AFR][1000 genomes]
rs74134359	0.89[AFR][1000 genomes]
rs74135308	1.00[AFR][1000 genomes]
rs74135324	1.00[AMR][1000 genomes]
rs74135330	1.00[AMR][1000 genomes]
rs74135343	1.00[AMR][1000 genomes]
rs74135345	1.00[AMR][1000 genomes]
rs74135348	0.83[AMR][1000 genomes]
rs74135349	1.00[AMR][1000 genomes]
rs74135355	1.00[AMR][1000 genomes]
rs74135357	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185791600-185793800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:185791600-185795800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:185792200-185795600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:185792400-185793800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:185792400-185795600	Enhancers	NHDF-Ad	bronchial
6	chr1:185792400-185795800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:185792600-185793400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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