Variant report

Variant	rs74135348
Chromosome Location	chr1:185773591-185773592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56156323	0.83[AMR][1000 genomes]
rs57073916	0.83[AMR][1000 genomes]
rs60546696	0.83[AMR][1000 genomes]
rs74133271	0.83[AMR][1000 genomes]
rs74133272	0.83[AMR][1000 genomes]
rs74133273	0.83[AMR][1000 genomes]
rs74133293	0.83[AMR][1000 genomes]
rs74133297	0.83[AMR][1000 genomes]
rs74133298	0.83[AMR][1000 genomes]
rs74133299	0.83[AMR][1000 genomes]
rs74133675	0.83[AMR][1000 genomes]
rs74133676	0.83[AMR][1000 genomes]
rs74135324	0.83[AMR][1000 genomes]
rs74135330	0.83[AMR][1000 genomes]
rs74135343	0.83[AMR][1000 genomes]
rs74135345	0.83[AMR][1000 genomes]
rs74135349	0.83[AMR][1000 genomes]
rs74135355	0.83[AMR][1000 genomes]
rs74135357	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185764800-185774800	Weak transcription	Aorta	Aorta
2	chr1:185772800-185774200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:185773400-185773600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:185773400-185773800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:185773400-185774000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:185773400-185774000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:185773400-185774000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:185773400-185774000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:185773400-185778000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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