Variant report

Variant	rs74133293
Chromosome Location	chr1:185721221-185721222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56156323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57073916	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60546696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133675	1.00[AMR][1000 genomes]
rs74133676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135348	0.83[AMR][1000 genomes]
rs74135349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135357	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv2753636	chr1:185706947-185734487	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185717600-185726400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:185718200-185732000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:185718800-185730800	Weak transcription	Psoas Muscle	Psoas
4	chr1:185720000-185721400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:185720200-185721400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:185720200-185726800	Weak transcription	Stomach Mucosa	stomach
7	chr1:185720400-185721600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:185721000-185721600	Flanking Active TSS	Aorta	Aorta
9	chr1:185721000-185722000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links