Variant report

Variant	rs59061676
Chromosome Location	chr9:97985362-97985363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97983165..97987058-chr9:97989235..97991846,4	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1800363	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647499	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647500	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647541	1.00[AMR][1000 genomes]
rs4647545	1.00[AMR][1000 genomes]
rs56769237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59172564	1.00[AMR][1000 genomes]
rs59985123	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528471	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528483	1.00[AMR][1000 genomes]
rs73532163	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532166	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532168	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532171	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532182	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532183	1.00[AMR][1000 genomes]
rs73534866	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534884	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541321	1.00[AFR][1000 genomes]
rs73541324	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7848866	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
2	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97963000-97993400	Weak transcription	Hela-S3	cervix
2	chr9:97969800-97986400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:97973600-98024000	Weak transcription	Gastric	stomach
4	chr9:97974000-98009400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:97978000-98008400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:97978200-97994400	Weak transcription	Primary T cells from cord blood	blood
7	chr9:97980400-97986800	Weak transcription	A549	lung
8	chr9:97981400-97986600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:97981400-97986600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:97981400-97993800	Weak transcription	Esophagus	oesophagus
11	chr9:97981400-98012400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:97981600-97986000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:97981600-97989200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:97981600-98009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:97983400-98012400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:97984400-97987200	Weak transcription	Fetal Lung	lung
17	chr9:97984600-97989200	Weak transcription	HSMMtube	muscle
18	chr9:97984600-97999600	Weak transcription	Fetal Heart	heart
19	chr9:97984800-97986400	Weak transcription	Fetal Stomach	stomach

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