Variant report

Variant	rs73539206
Chromosome Location	chr9:98033374-98033375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98024543..98026089-chr9:98030746..98033601,2	K562	blood:
2	chr9:98026719..98030157-chr9:98032285..98035514,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1800363	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647499	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647500	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647541	1.00[AMR][1000 genomes]
rs4647545	1.00[AMR][1000 genomes]
rs56769237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59061676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59172564	1.00[AMR][1000 genomes]
rs59985123	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528471	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528483	1.00[AMR][1000 genomes]
rs73532163	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532166	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532168	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532171	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532182	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532183	1.00[AMR][1000 genomes]
rs73534866	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534884	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541321	1.00[AFR][1000 genomes]
rs73541324	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7848866	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98024200-98034600	Weak transcription	Esophagus	oesophagus
2	chr9:98027000-98034200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:98027600-98033800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:98028400-98045400	Weak transcription	Gastric	stomach
5	chr9:98029400-98038200	Weak transcription	Primary T cells from cord blood	blood
6	chr9:98030400-98035400	Weak transcription	GM12878-XiMat	blood
7	chr9:98031000-98033400	Enhancers	Fetal Intestine Small	intestine
8	chr9:98031000-98033400	Enhancers	A549	lung
9	chr9:98031200-98033400	Enhancers	Fetal Intestine Large	intestine
10	chr9:98031200-98034800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:98032000-98045400	Weak transcription	Pancreas	Pancrea
12	chr9:98032200-98034800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr9:98032600-98033800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:98032800-98033800	Enhancers	HepG2	liver
15	chr9:98033200-98033600	Weak transcription	Fetal Lung	lung

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