Variant report

Variant	rs73534884
Chromosome Location	chr9:97969937-97969938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97968772..97971256-chr9:97972231..97974101,2	MCF-7	breast:
2	chr9:97960729..97962513-chr9:97968919..97971853,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1800363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647423	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647425	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647452	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647541	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647545	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56769237	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59061676	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59172564	1.00[AMR][1000 genomes]
rs59985123	1.00[AMR][1000 genomes]
rs73528471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528483	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532183	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537206	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537207	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537294	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539206	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539218	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541317	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541318	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541320	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541321	0.88[AFR][1000 genomes]
rs73541324	1.00[AMR][1000 genomes]
rs7848866	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
2	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97962000-97980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:97963000-97993400	Weak transcription	Hela-S3	cervix
3	chr9:97964400-97971800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:97968400-97970200	Enhancers	Fetal Intestine Large	intestine
5	chr9:97968600-97976800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:97968800-97970200	Enhancers	A549	lung
7	chr9:97968800-97973400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:97969000-97970000	Enhancers	Fetal Lung	lung
9	chr9:97969000-97970000	Enhancers	Small Intestine	intestine
10	chr9:97969000-97970000	Enhancers	HSMMtube	muscle
11	chr9:97969000-97973000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:97969000-97973400	Weak transcription	Fetal Kidney	kidney
13	chr9:97969400-97970000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:97969400-97973200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:97969600-97970000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:97969600-97970000	Enhancers	HepG2	liver
17	chr9:97969600-97970200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr9:97969600-97973400	Weak transcription	Ovary	ovary
19	chr9:97969800-97970000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:97969800-97976400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:97969800-97976800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr9:97969800-97981200	Weak transcription	Fetal Stomach	stomach
23	chr9:97969800-97986400	Weak transcription	Fetal Intestine Small	intestine

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