Variant report

Variant	rs73541318
Chromosome Location	chr9:98100004-98100005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1800363	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647499	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647500	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647541	1.00[AMR][1000 genomes]
rs4647545	1.00[AMR][1000 genomes]
rs56769237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59061676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59172564	1.00[AMR][1000 genomes]
rs59985123	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528471	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528483	1.00[AMR][1000 genomes]
rs73532163	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532166	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532168	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532171	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532182	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532183	1.00[AMR][1000 genomes]
rs73534866	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534884	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541321	1.00[AFR][1000 genomes]
rs73541324	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7848866	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv3330996	chr9:98083446-98112507	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98099000-98102600	Weak transcription	Fetal Lung	lung
2	chr9:98099200-98101000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:98099400-98100800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:98099600-98105000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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