Variant report

Variant	rs59116619
Chromosome Location	chr10:45666078-45666079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF22-2	chr10:45665455-45666837	ENSG00000243349.2

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11239389	1.00[AFR][1000 genomes]
rs17157448	1.00[AMR][1000 genomes]
rs58720456	1.00[AMR][1000 genomes]
rs60354481	1.00[AMR][1000 genomes]
rs7072240	1.00[AMR][1000 genomes]
rs7091078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275136	1.00[AMR][1000 genomes]
rs73275149	1.00[AMR][1000 genomes]
rs73275179	1.00[AMR][1000 genomes]
rs73275183	1.00[AMR][1000 genomes]
rs73277360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287567	1.00[AMR][1000 genomes]
rs73287569	1.00[AMR][1000 genomes]
rs73287573	1.00[AMR][1000 genomes]
rs73287578	1.00[AMR][1000 genomes]
rs73287579	1.00[AMR][1000 genomes]
rs73287582	1.00[AMR][1000 genomes]
rs73287584	1.00[AMR][1000 genomes]
rs73287589	1.00[AMR][1000 genomes]
rs73287599	1.00[AMR][1000 genomes]
rs73287601	1.00[AMR][1000 genomes]
rs73289603	1.00[AMR][1000 genomes]
rs73289605	1.00[AMR][1000 genomes]
rs73289609	1.00[AMR][1000 genomes]
rs73289610	1.00[AMR][1000 genomes]
rs73289682	1.00[AMR][1000 genomes]
rs73289688	1.00[AMR][1000 genomes]
rs73289692	1.00[AMR][1000 genomes]
rs73289694	1.00[AMR][1000 genomes]
rs73289697	1.00[AMR][1000 genomes]
rs73291604	1.00[AMR][1000 genomes]
rs73291615	1.00[AMR][1000 genomes]
rs73291688	1.00[AMR][1000 genomes]
rs73291689	1.00[AMR][1000 genomes]
rs7902733	1.00[AMR][1000 genomes]
rs7906497	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv895104	chr10:45636867-45715369	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv982848	chr10:45657182-45673875	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895106	chr10:45659032-45715369	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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