Variant report
| Variant | rs73275149 |
|---|---|
| Chromosome Location | chr10:45619939-45619940 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr10:45619860-45620010 | GM12873 | blood: | n/a | n/a |
| 2 | CTCF | chr10:45619880-45620030 | Caco-2 | colon: | n/a | n/a |
| 3 | CTCF | chr10:45619839-45620066 | K562 | blood: | n/a | n/a |
| 4 | CTCF | chr10:45619767-45620101 | K562 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CUBNP3 | TF binding region |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs17157448 | 1.00[AMR][1000 genomes] |
| rs58720456 | 1.00[AMR][1000 genomes] |
| rs59116619 | 1.00[AMR][1000 genomes] |
| rs60354481 | 1.00[AMR][1000 genomes] |
| rs7072240 | 1.00[AMR][1000 genomes] |
| rs7091078 | 1.00[AMR][1000 genomes] |
| rs73275136 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73275179 | 1.00[AMR][1000 genomes] |
| rs73275183 | 1.00[AMR][1000 genomes] |
| rs73277360 | 1.00[AMR][1000 genomes] |
| rs73277362 | 1.00[AMR][1000 genomes] |
| rs73287567 | 1.00[AMR][1000 genomes] |
| rs73287569 | 1.00[AMR][1000 genomes] |
| rs73287573 | 1.00[AMR][1000 genomes] |
| rs73287578 | 1.00[AMR][1000 genomes] |
| rs73287579 | 1.00[AMR][1000 genomes] |
| rs73287582 | 1.00[AMR][1000 genomes] |
| rs73287584 | 1.00[AMR][1000 genomes] |
| rs73287589 | 1.00[AMR][1000 genomes] |
| rs73287599 | 1.00[AMR][1000 genomes] |
| rs73287601 | 1.00[AMR][1000 genomes] |
| rs73289603 | 1.00[AMR][1000 genomes] |
| rs73289605 | 1.00[AMR][1000 genomes] |
| rs73289609 | 1.00[AMR][1000 genomes] |
| rs73289610 | 1.00[AMR][1000 genomes] |
| rs73289682 | 1.00[AMR][1000 genomes] |
| rs73289688 | 1.00[AMR][1000 genomes] |
| rs73289692 | 1.00[AMR][1000 genomes] |
| rs73289694 | 1.00[AMR][1000 genomes] |
| rs73289697 | 1.00[AMR][1000 genomes] |
| rs73291604 | 1.00[AMR][1000 genomes] |
| rs73291615 | 1.00[AMR][1000 genomes] |
| rs73291688 | 1.00[AMR][1000 genomes] |
| rs73291689 | 1.00[AMR][1000 genomes] |
| rs7902733 | 1.00[AMR][1000 genomes] |
| rs7906497 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831848 | chr10:45490176-45667670 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv2750897 | chr10:45550145-45820136 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv947903 | chr10:45598715-45657182 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
