Variant report

Variant	rs73291615
Chromosome Location	chr10:45596479-45596480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs17157448	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57644166	0.89[AFR][1000 genomes]
rs58684533	0.94[AFR][1000 genomes]
rs58720456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59116619	1.00[AMR][1000 genomes]
rs60354481	1.00[AMR][1000 genomes]
rs60575180	0.89[AFR][1000 genomes]
rs7072240	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7091078	1.00[AMR][1000 genomes]
rs73275136	1.00[AMR][1000 genomes]
rs73275149	1.00[AMR][1000 genomes]
rs73275179	1.00[AMR][1000 genomes]
rs73275183	1.00[AMR][1000 genomes]
rs73277360	1.00[AMR][1000 genomes]
rs73277362	1.00[AMR][1000 genomes]
rs73279386	0.94[AFR][1000 genomes]
rs73281403	0.84[AFR][1000 genomes]
rs73281405	0.84[AFR][1000 genomes]
rs73283451	0.84[AFR][1000 genomes]
rs73283462	0.89[AFR][1000 genomes]
rs73283464	0.89[AFR][1000 genomes]
rs73283470	0.89[AFR][1000 genomes]
rs73285555	0.94[AFR][1000 genomes]
rs73285558	0.94[AFR][1000 genomes]
rs73287510	0.94[AFR][1000 genomes]
rs73287546	0.94[AFR][1000 genomes]
rs73287549	0.94[AFR][1000 genomes]
rs73287562	0.94[AFR][1000 genomes]
rs73287567	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287569	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287573	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287578	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287579	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287582	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287584	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287589	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287599	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287601	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289603	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289605	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289609	1.00[AMR][1000 genomes]
rs73289610	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289682	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289688	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289692	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289694	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289697	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291604	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291688	1.00[AMR][1000 genomes]
rs73291689	1.00[AMR][1000 genomes]
rs7902733	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7906497	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7907860	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45591000-45602000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:45596000-45596600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr10:45596000-45596600	Bivalent Enhancer	Brain Hippocampus Middle	brain
4	chr10:45596000-45596800	Enhancers	Fetal Muscle Leg	muscle
5	chr10:45596200-45596600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:45596200-45596800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:45596200-45596800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:45596200-45596800	Weak transcription	Brain Germinal Matrix	brain
9	chr10:45596400-45596600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links