Variant report

Variant	rs73281403
Chromosome Location	chr10:45469529-45469530
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45442718..45444232-chr10:45467688..45470115,2	MCF-7	breast:
2	chr10:45425100..45428084-chr10:45468881..45470918,3	K562	blood:
3	chr10:45466696..45473467-chr10:45492241..45499604,15	K562	blood:
4	chr10:45468966..45470548-chr10:45472555..45474285,2	MCF-7	breast:
5	chr10:45463326..45466308-chr10:45468045..45470693,6	MCF-7	breast:
6	chr10:45443298..45445238-chr10:45469155..45471485,2	MCF-7	breast:
7	chr10:45467811..45472693-chr10:45495081..45499604,7	K562	blood:

Variant related genes	Relation type
ENSG00000165511	Chromatin interaction
ENSG00000107551	Chromatin interaction
ENSG00000165512	Chromatin interaction
ENSG00000187783	Chromatin interaction
ENSG00000165507	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57644166	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58139903	1.00[AMR][1000 genomes]
rs58684533	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58720456	0.84[AFR][1000 genomes]
rs60575180	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60839064	1.00[AMR][1000 genomes]
rs73279386	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283447	1.00[AMR][1000 genomes]
rs73283451	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283455	1.00[AMR][1000 genomes]
rs73283462	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283470	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285555	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285558	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287510	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287546	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287549	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287556	1.00[AMR][1000 genomes]
rs73287562	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287567	0.80[AFR][1000 genomes]
rs73287569	0.80[AFR][1000 genomes]
rs73291615	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv526734	chr10:45458485-45492054	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45460000-45470000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:45460400-45469800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:45462000-45469800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:45462800-45469600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:45464200-45469800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:45464200-45469800	Weak transcription	Osteobl	bone
7	chr10:45464400-45469800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:45464600-45469600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:45464600-45469600	Weak transcription	Fetal Brain Male	brain
10	chr10:45464600-45470000	Weak transcription	Fetal Kidney	kidney
11	chr10:45464600-45470000	Genic enhancers	Fetal Muscle Trunk	muscle
12	chr10:45464800-45469800	Weak transcription	NHLF	lung
13	chr10:45464800-45470000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:45465000-45469600	Weak transcription	Thymus	Thymus
15	chr10:45465000-45470200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:45465200-45470000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:45465400-45469600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:45465400-45469600	Weak transcription	A549	lung
19	chr10:45465600-45469600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:45465800-45470000	Weak transcription	Psoas Muscle	Psoas
21	chr10:45466800-45470200	Genic enhancers	HSMMtube	muscle
22	chr10:45467000-45470000	Genic enhancers	Fetal Muscle Leg	muscle
23	chr10:45467200-45470000	Enhancers	Right Atrium	heart
24	chr10:45467400-45469600	Weak transcription	Ovary	ovary
25	chr10:45467600-45469600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:45467600-45469600	Weak transcription	Fetal Brain Female	brain
27	chr10:45467800-45469600	Weak transcription	Liver	Liver
28	chr10:45467800-45469600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr10:45467800-45470400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:45468000-45469600	Weak transcription	HepG2	liver
31	chr10:45468000-45470000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:45468000-45471800	Enhancers	Fetal Heart	heart
33	chr10:45468200-45469800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr10:45468200-45469800	Enhancers	Primary B cells from peripheral blood	blood
35	chr10:45468200-45470000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:45468200-45470000	Enhancers	Fetal Thymus	thymus
37	chr10:45468200-45470000	Enhancers	HSMM	muscle
38	chr10:45468400-45469600	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr10:45468400-45469800	Enhancers	H9 Cell Line	embryonic stem cell
40	chr10:45468400-45469800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:45468400-45469800	Genic enhancers	Brain Cingulate Gyrus	brain
42	chr10:45468400-45469800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:45468400-45469800	Enhancers	Fetal Intestine Large	intestine
44	chr10:45468400-45469800	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr10:45468400-45470000	Enhancers	H1 Cell Line	embryonic stem cell
46	chr10:45468400-45470000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:45468400-45470000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr10:45468400-45470000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:45468400-45470000	Enhancers	Primary B cells from cord blood	blood
50	chr10:45468400-45470000	Enhancers	Placenta	Placenta

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