Variant report

Variant	rs73287562
Chromosome Location	chr10:45566571-45566572
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf25-2	chr10:45566240-45566657	NONHSAT013070

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs17157448	0.84[AFR][1000 genomes]
rs57644166	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58139903	1.00[AMR][1000 genomes]
rs58684533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58720456	0.94[AFR][1000 genomes]
rs60575180	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60839064	1.00[AMR][1000 genomes]
rs7072240	0.84[AFR][1000 genomes]
rs73279386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281403	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281405	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283447	1.00[AMR][1000 genomes]
rs73283451	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283455	1.00[AMR][1000 genomes]
rs73283462	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283470	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287556	1.00[AMR][1000 genomes]
rs73287567	0.90[AFR][1000 genomes]
rs73287569	0.90[AFR][1000 genomes]
rs73287573	0.84[AFR][1000 genomes]
rs73287578	0.84[AFR][1000 genomes]
rs73287579	0.84[AFR][1000 genomes]
rs73287582	0.84[AFR][1000 genomes]
rs73287584	0.84[AFR][1000 genomes]
rs73287589	0.84[AFR][1000 genomes]
rs73287599	0.84[AFR][1000 genomes]
rs73287601	0.84[AFR][1000 genomes]
rs73289603	0.84[AFR][1000 genomes]
rs73289605	0.84[AFR][1000 genomes]
rs73289610	0.84[AFR][1000 genomes]
rs73289682	0.84[AFR][1000 genomes]
rs73289688	0.84[AFR][1000 genomes]
rs73289692	0.84[AFR][1000 genomes]
rs73289694	0.89[AFR][1000 genomes]
rs73289697	0.89[AFR][1000 genomes]
rs73291604	0.89[AFR][1000 genomes]
rs73291615	0.94[AFR][1000 genomes]
rs7902733	0.84[AFR][1000 genomes]
rs7906497	0.84[AFR][1000 genomes]
rs7907860	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv971917	chr10:45547355-45595482	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45560200-45566600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:45566400-45566600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr10:45566400-45566800	Enhancers	Placenta	Placenta

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