Variant report

Variant	rs73287549
Chromosome Location	chr10:45554534-45554535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45547265..45549115-chr10:45552966..45555091,2	K562	blood:
2	chr10:45551775..45554609-chr10:45555349..45558284,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs17157448	0.84[AFR][1000 genomes]
rs57644166	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58139903	1.00[AMR][1000 genomes]
rs58684533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58720456	0.94[AFR][1000 genomes]
rs60575180	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60839064	1.00[AMR][1000 genomes]
rs7072240	0.84[AFR][1000 genomes]
rs73279386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281403	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281405	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283447	1.00[AMR][1000 genomes]
rs73283451	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283455	1.00[AMR][1000 genomes]
rs73283462	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283470	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287556	1.00[AMR][1000 genomes]
rs73287562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287567	0.90[AFR][1000 genomes]
rs73287569	0.90[AFR][1000 genomes]
rs73287573	0.84[AFR][1000 genomes]
rs73287578	0.84[AFR][1000 genomes]
rs73287579	0.84[AFR][1000 genomes]
rs73287582	0.84[AFR][1000 genomes]
rs73287584	0.84[AFR][1000 genomes]
rs73287589	0.84[AFR][1000 genomes]
rs73287599	0.84[AFR][1000 genomes]
rs73287601	0.84[AFR][1000 genomes]
rs73289603	0.84[AFR][1000 genomes]
rs73289605	0.84[AFR][1000 genomes]
rs73289610	0.84[AFR][1000 genomes]
rs73289682	0.84[AFR][1000 genomes]
rs73289688	0.84[AFR][1000 genomes]
rs73289692	0.84[AFR][1000 genomes]
rs73289694	0.89[AFR][1000 genomes]
rs73289697	0.89[AFR][1000 genomes]
rs73291604	0.89[AFR][1000 genomes]
rs73291615	0.94[AFR][1000 genomes]
rs7902733	0.84[AFR][1000 genomes]
rs7906497	0.84[AFR][1000 genomes]
rs7907860	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv971917	chr10:45547355-45595482	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	nsv947902	chr10:45550636-45554818	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45552000-45559600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:45553400-45555000	Enhancers	HUVEC	blood vessel
3	chr10:45553400-45555600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:45553800-45554600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr10:45553800-45554600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:45553800-45555000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr10:45553800-45555000	Enhancers	NHEK	skin
8	chr10:45554000-45554800	Enhancers	HMEC	breast
9	chr10:45554000-45555000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr10:45554000-45555000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:45554200-45554600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:45554200-45554600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:45554200-45555200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:45554400-45554600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:45554400-45558800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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