Variant report

Variant	rs73283470
Chromosome Location	chr10:45496182-45496183
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:45454284..45457608-chr10:45494603..45497438,3	K562	blood:
2	chr10:45454284..45457115-chr10:45494603..45497911,3	K562	blood:
3	chr10:45466696..45473467-chr10:45492241..45499604,15	K562	blood:
4	chr10:45472874..45475868-chr10:45493532..45497096,3	K562	blood:
5	chr10:45479436..45481246-chr10:45493873..45496540,2	K562	blood:
6	chr10:45494680..45497168-chr10:45675442..45677371,2	K562	blood:
7	chr10:45474000..45475702-chr10:45494679..45496847,2	MCF-7	breast:
8	chr10:45495745..45498371-chr10:45630285..45633118,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000227683	Chromatin interaction
ENSG00000165507	Chromatin interaction
ENSG00000224812	Chromatin interaction
ENSG00000273363	Chromatin interaction
ENSG00000226937	Chromatin interaction
ENSG00000107551	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs57644166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58139903	1.00[AMR][1000 genomes]
rs58684533	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58720456	0.89[AFR][1000 genomes]
rs60575180	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60839064	1.00[AMR][1000 genomes]
rs73279386	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281403	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281405	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283447	1.00[AMR][1000 genomes]
rs73283451	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283455	1.00[AMR][1000 genomes]
rs73283462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285555	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285558	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287510	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287546	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287549	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287556	1.00[AMR][1000 genomes]
rs73287562	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287567	0.85[AFR][1000 genomes]
rs73287569	0.85[AFR][1000 genomes]
rs73289694	0.84[AFR][1000 genomes]
rs73289697	0.84[AFR][1000 genomes]
rs73291604	0.84[AFR][1000 genomes]
rs73291615	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45487200-45496200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:45492200-45496200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:45492600-45497800	Enhancers	HepG2	liver
4	chr10:45493000-45496200	Weak transcription	Esophagus	oesophagus
5	chr10:45494400-45496200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:45495000-45496200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:45495200-45496200	Flanking Active TSS	Dnd41	blood
8	chr10:45495200-45496400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:45495200-45496400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:45495400-45496200	Flanking Active TSS	Brain Substantia Nigra	brain
11	chr10:45495400-45496200	Flanking Active TSS	Fetal Thymus	thymus
12	chr10:45495400-45496400	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr10:45495600-45496200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:45495600-45496200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:45495600-45496200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:45495600-45496200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr10:45495600-45496200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chr10:45495600-45496200	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr10:45495600-45496200	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr10:45495600-45496200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr10:45495600-45496200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
22	chr10:45495600-45496200	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr10:45495600-45496200	Flanking Active TSS	Brain Cingulate Gyrus	brain
24	chr10:45495600-45496200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr10:45495600-45496200	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr10:45495600-45496200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr10:45495600-45496200	Flanking Active TSS	Fetal Brain Male	brain
28	chr10:45495600-45496200	Flanking Active TSS	Fetal Intestine Small	intestine
29	chr10:45495600-45496200	Flanking Active TSS	Fetal Muscle Leg	muscle
30	chr10:45495600-45496200	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr10:45495600-45496200	Enhancers	Spleen	Spleen
32	chr10:45495600-45496200	Flanking Active TSS	HSMM	muscle
33	chr10:45495600-45496200	Flanking Active TSS	HSMMtube	muscle
34	chr10:45495600-45496200	Flanking Active TSS	HUVEC	blood vessel
35	chr10:45495600-45496200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr10:45495600-45496200	Flanking Active TSS	Osteobl	bone
37	chr10:45495600-45496400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:45495600-45496400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr10:45495600-45496800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:45495600-45497400	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr10:45495600-45498000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:45495800-45496200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
43	chr10:45495800-45496200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:45495800-45496200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
45	chr10:45495800-45496200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr10:45495800-45496200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:45495800-45496200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
48	chr10:45495800-45496200	Flanking Active TSS	Primary B cells from peripheral blood	blood
49	chr10:45495800-45496200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr10:45495800-45496200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

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