Variant report
| Variant | rs60575180 |
|---|---|
| Chromosome Location | chr10:45548353-45548354 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:45547265..45549115-chr10:45552966..45555091,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs57644166 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58139903 | 1.00[AMR][1000 genomes] |
| rs58684533 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58720456 | 0.89[AFR][1000 genomes] |
| rs60839064 | 1.00[AMR][1000 genomes] |
| rs73279386 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73281403 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73281405 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73283447 | 1.00[AMR][1000 genomes] |
| rs73283451 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73283455 | 1.00[AMR][1000 genomes] |
| rs73283462 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73283464 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73283470 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73285555 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73285558 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73287510 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73287546 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73287549 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73287556 | 1.00[AMR][1000 genomes] |
| rs73287562 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73287567 | 0.85[AFR][1000 genomes] |
| rs73287569 | 0.85[AFR][1000 genomes] |
| rs73289694 | 0.84[AFR][1000 genomes] |
| rs73289697 | 0.84[AFR][1000 genomes] |
| rs73291604 | 0.84[AFR][1000 genomes] |
| rs73291615 | 0.89[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831846 | chr10:45322236-45556370 | Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv831848 | chr10:45490176-45667670 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv971917 | chr10:45547355-45595482 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:45548200-45548400 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr10:45548200-45548600 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
