Variant report

Variant	rs73287589
Chromosome Location	chr10:45576738-45576739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs17157448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58684533	0.84[AFR][1000 genomes]
rs58720456	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59116619	1.00[AMR][1000 genomes]
rs60354481	1.00[AMR][1000 genomes]
rs7072240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7091078	1.00[AMR][1000 genomes]
rs73275136	1.00[AMR][1000 genomes]
rs73275149	1.00[AMR][1000 genomes]
rs73275179	1.00[AMR][1000 genomes]
rs73275183	1.00[AMR][1000 genomes]
rs73277360	1.00[AMR][1000 genomes]
rs73277362	1.00[AMR][1000 genomes]
rs73279386	0.84[AFR][1000 genomes]
rs73285555	0.84[AFR][1000 genomes]
rs73285558	0.84[AFR][1000 genomes]
rs73287510	0.84[AFR][1000 genomes]
rs73287546	0.84[AFR][1000 genomes]
rs73287549	0.84[AFR][1000 genomes]
rs73287562	0.84[AFR][1000 genomes]
rs73287567	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287569	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289609	1.00[AMR][1000 genomes]
rs73289610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289694	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289697	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291604	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291615	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291688	1.00[AMR][1000 genomes]
rs73291689	1.00[AMR][1000 genomes]
rs7902733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7906497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7907860	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv971917	chr10:45547355-45595482	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45572600-45577400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:45573000-45577000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:45573000-45577000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:45576400-45577600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:45576600-45576800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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