Variant report

Variant	rs59146342
Chromosome Location	chr11:63597071-63597072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63595792..63597844-chr11:63752705..63754883,2	MCF-7	breast:
2	chr11:63534833..63536648-chr11:63595467..63599142,3	MCF-7	breast:
3	chr11:63595860..63598960-chr11:63603079..63605132,3	MCF-7	breast:
4	chr11:63595369..63597909-chr11:63603609..63605330,2	MCF-7	breast:
5	chr11:63580628..63582590-chr11:63595009..63597871,2	K562	blood:
6	chr11:63580137..63581859-chr11:63595267..63597518,2	MCF-7	breast:
7	chr11:63583415..63585834-chr11:63596910..63599617,2	K562	blood:
8	chr11:63595602..63598519-chr11:63603964..63606934,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168005	Chromatin interaction
ENSG00000167770	Chromatin interaction
ENSG00000072518	Chromatin interaction
ENSG00000255651	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11825727	1.00[AMR][1000 genomes]
rs57058815	1.00[AMR][1000 genomes]
rs58822345	1.00[AMR][1000 genomes]
rs59054123	1.00[AMR][1000 genomes]
rs60725842	1.00[AMR][1000 genomes]
rs61184552	1.00[AMR][1000 genomes]
rs7125886	1.00[AMR][1000 genomes]
rs73492260	1.00[AMR][1000 genomes]
rs73492262	1.00[AMR][1000 genomes]
rs73492266	1.00[AMR][1000 genomes]
rs73492273	1.00[AMR][1000 genomes]
rs73492274	1.00[AMR][1000 genomes]
rs73492287	1.00[AMR][1000 genomes]
rs73492297	1.00[AMR][1000 genomes]
rs73494110	1.00[AMR][1000 genomes]
rs73494112	1.00[AMR][1000 genomes]
rs73494126	1.00[AMR][1000 genomes]
rs73494128	1.00[AMR][1000 genomes]
rs73494144	1.00[AMR][1000 genomes]
rs73494160	1.00[AMR][1000 genomes]
rs73494167	1.00[AMR][1000 genomes]
rs73494181	1.00[AMR][1000 genomes]
rs73496034	1.00[AMR][1000 genomes]
rs73496075	1.00[AMR][1000 genomes]
rs73496090	1.00[AMR][1000 genomes]
rs73496096	1.00[AMR][1000 genomes]
rs73496099	1.00[AMR][1000 genomes]
rs73496100	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63582200-63604600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:63582400-63604800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:63582600-63604800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:63582600-63604800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:63583000-63597200	Strong transcription	Fetal Muscle Leg	muscle
6	chr11:63583200-63597200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:63583600-63604600	Weak transcription	Fetal Brain Male	brain
8	chr11:63584200-63597200	Strong transcription	Fetal Brain Female	brain
9	chr11:63584200-63598000	Strong transcription	Fetal Stomach	stomach
10	chr11:63584200-63598000	Strong transcription	Lung	lung
11	chr11:63584200-63604600	Weak transcription	Fetal Heart	heart
12	chr11:63584200-63604800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:63584400-63597200	Strong transcription	Stomach Smooth Muscle	stomach
14	chr11:63584400-63598000	Strong transcription	Brain Germinal Matrix	brain
15	chr11:63584400-63598400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:63585400-63598000	Strong transcription	Spleen	Spleen
17	chr11:63588800-63604800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:63589200-63605000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:63589400-63597400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:63590600-63598000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:63590600-63604600	Weak transcription	K562	blood
22	chr11:63590800-63605200	Weak transcription	Small Intestine	intestine
23	chr11:63591000-63604600	Weak transcription	HMEC	breast
24	chr11:63591000-63604800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:63592000-63604600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:63592400-63600000	Weak transcription	Primary B cells from cord blood	blood
27	chr11:63592400-63604600	Weak transcription	Fetal Kidney	kidney
28	chr11:63592600-63599800	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr11:63592600-63600600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:63592600-63602200	Weak transcription	Colonic Mucosa	Colon
31	chr11:63592600-63604800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr11:63592600-63604800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:63592800-63598600	Weak transcription	Esophagus	oesophagus
34	chr11:63592800-63599800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr11:63592800-63604400	Weak transcription	Hela-S3	cervix
36	chr11:63592800-63604600	Weak transcription	Pancreas	Pancrea
37	chr11:63592800-63604800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:63592800-63605000	Weak transcription	Liver	Liver
39	chr11:63593000-63604600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:63593000-63604600	Weak transcription	NHEK	skin
41	chr11:63593000-63605200	Weak transcription	NHDF-Ad	bronchial
42	chr11:63593000-63606400	Weak transcription	Aorta	Aorta
43	chr11:63593200-63598400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:63593200-63604800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:63594000-63599800	Weak transcription	GM12878-XiMat	blood
46	chr11:63594000-63604600	Weak transcription	Stomach Mucosa	stomach
47	chr11:63594000-63605600	Weak transcription	HSMMtube	muscle
48	chr11:63594200-63599800	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr11:63594200-63605000	Weak transcription	Fetal Lung	lung
50	chr11:63594200-63605200	Weak transcription	NH-A	brain

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