Variant report

Variant	rs73492274
Chromosome Location	chr11:63594770-63594771
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63582446..63584284-chr11:63593106..63594925,2	K562	blood:
2	chr11:63582446..63585592-chr11:63592203..63594925,4	K562	blood:
3	chr11:63535921..63536439-chr11:63594269..63595109,2	MCF-7	breast:
4	chr11:63594404..63596969-chr11:63711957..63713589,2	MCF-7	breast:
5	chr11:63579425..63582042-chr11:63593769..63595794,2	MCF-7	breast:
6	chr11:63539161..63540778-chr11:63594403..63596443,2	K562	blood:
7	chr11:63535406..63536973-chr11:63593923..63595656,2	K562	blood:
8	chr11:63592868..63595194-chr11:63753162..63754708,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000167770	Chromatin interaction
ENSG00000255651	Chromatin interaction
ENSG00000168005	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11825727	1.00[AMR][1000 genomes]
rs57058815	1.00[AMR][1000 genomes]
rs58822345	1.00[AMR][1000 genomes]
rs59054123	1.00[AMR][1000 genomes]
rs59146342	1.00[AMR][1000 genomes]
rs60725842	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61184552	1.00[AMR][1000 genomes]
rs7125886	1.00[AMR][1000 genomes]
rs73492260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492287	1.00[AMR][1000 genomes]
rs73492297	1.00[AMR][1000 genomes]
rs73494110	1.00[AMR][1000 genomes]
rs73494112	1.00[AMR][1000 genomes]
rs73494126	1.00[AMR][1000 genomes]
rs73494128	1.00[AMR][1000 genomes]
rs73494144	1.00[AMR][1000 genomes]
rs73494160	1.00[AMR][1000 genomes]
rs73494167	1.00[AMR][1000 genomes]
rs73494181	1.00[AMR][1000 genomes]
rs73496034	1.00[AMR][1000 genomes]
rs73496075	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496090	1.00[AMR][1000 genomes]
rs73496096	1.00[AMR][1000 genomes]
rs73496099	1.00[AMR][1000 genomes]
rs73496100	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63582200-63604600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:63582400-63604800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:63582600-63604800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:63582600-63604800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:63582800-63595800	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:63582800-63596400	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:63583000-63595400	Strong transcription	Thymus	Thymus
8	chr11:63583000-63596200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:63583000-63596400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:63583000-63596800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:63583000-63597000	Strong transcription	Brain Cingulate Gyrus	brain
12	chr11:63583000-63597200	Strong transcription	Fetal Muscle Leg	muscle
13	chr11:63583200-63594800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:63583200-63595000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:63583200-63595400	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr11:63583200-63596200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:63583200-63596200	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:63583200-63596200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:63583200-63596400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:63583200-63597200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:63583400-63594800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:63583400-63596400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:63583400-63596400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:63583400-63596400	Strong transcription	Fetal Intestine Small	intestine
25	chr11:63583600-63594800	Strong transcription	Brain Inferior Temporal Lobe	brain
26	chr11:63583600-63595000	Strong transcription	H9 Cell Line	embryonic stem cell
27	chr11:63583600-63595000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:63583600-63595000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:63583600-63595400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:63583600-63595400	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:63583600-63595400	Strong transcription	NHLF	lung
32	chr11:63583600-63596200	Strong transcription	Brain Hippocampus Middle	brain
33	chr11:63583600-63596400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:63583600-63596400	Strong transcription	Fetal Muscle Trunk	muscle
35	chr11:63583600-63596800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:63583600-63604600	Weak transcription	Fetal Brain Male	brain
37	chr11:63583800-63594800	Strong transcription	A549	lung
38	chr11:63583800-63595400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:63583800-63596000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:63583800-63596400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:63583800-63596400	Strong transcription	Adipose Nuclei	Adipose
42	chr11:63583800-63596400	Strong transcription	Brain Anterior Caudate	brain
43	chr11:63583800-63596400	Strong transcription	Fetal Intestine Large	intestine
44	chr11:63583800-63596600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:63584000-63595000	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr11:63584200-63596200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:63584200-63597200	Strong transcription	Fetal Brain Female	brain
48	chr11:63584200-63598000	Strong transcription	Fetal Stomach	stomach
49	chr11:63584200-63598000	Strong transcription	Lung	lung
50	chr11:63584200-63604600	Weak transcription	Fetal Heart	heart

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